KEGG   Frondihabitans sp. PAMC 28766: AX769_10440
Entry
AX769_10440       CDS       T04281                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
frp  Frondihabitans sp. PAMC 28766
Pathway
frp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:frp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AX769_10440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:frp03400]
    AX769_10440
Enzymes [BR:frp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AX769_10440
DNA repair and recombination proteins [BR:frp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AX769_10440
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AMM20489
UniProt: A0A126YZR1
LinkDB
Position
complement(2156635..2159181)
AA seq 848 aa
MATKGRGERVSVGGHTLQLTNLDKVLYQATGTTKGDVIAYYAAVAEWMLPHTEDRPATRK
RWVNGVDGEVFFEKNLPDSAPDWVASHTIEHSDHSNVYPLVNDLATLTWLGQVAALEIHV
PQWRFGPRGAQRNPDRLVLDLDPGEGVGLPECVAVAQELKKIVDGMGLGLMPVTSGSKGI
HLYAALDGKQSPQQVSDIAHELAKAMEADHPDLVLSTMGKQDRRGKVFLDWSQNNGNKTT
IAPYSLRGREHPTVAMPRTWRELASRTLRQMEYPDVLKALKRRGDPLADLSSGTPVPPGE
LDRETMHNSETPVSAREDRLAKYRSMRDPSKTREPVPAEAPEPSDNQTFVIQEHHATRLH
WDFRLEHDGVLVSWALPKGEPQDVKQNHLAVQTEDHPLEYGTFEGTIAKGEYGAGEVTIW
DSGTYDLEKWRDGKEVIVVLHGEQRGSRRIALIHTGHGGGAGSSTAKQEHNWLIHRMKDD
DADDAGSGGKASRPSSKGGHQDPAPRPQTKRTTRKRPVGDPVQPMLASPGDAAAIGDASD
WAYEMKWDGVRAVVTVHDGAVTLTSRNGHDMSASYPEFDGLPDRLGDVGDAVLDGEIVAV
DRNGRPDFGLLQTRMKLTRPRDVERVRETAPVRLLLFDVMSLDGQSLEDDDYDTRRAALQ
KAVELKPRDKTIDVPPAFEGSLAEAMSFSKRLKLEGVVAKRRDSGYSAGRRSRAWIKLKH
HATQEVVIAGWRPGAGRRANGVGSLLMGLPTDEGLKYVGRVGTGFSDKELDELLPTFGRE
ARKTSPLVDVPTADARDAHWITASRVGEVEFAEWTSTGRLRQPSWRGWRPDKDVDQVVRE
SGDPSRAS
NT seq 2547 nt   +upstreamnt  +downstreamnt
atggcgacgaaagggcgaggcgagcgcgtcagcgtgggcgggcacaccctccagctgacg
aacctcgacaaggtgctctaccaggcgaccggaaccaccaagggcgacgtcatcgcctac
tacgcggccgtcgccgagtggatgctgccccacaccgaggatcgcccggcgacccgcaag
cgctgggtcaacggtgtcgacggcgaggtcttcttcgagaagaatctgcccgactccgca
cccgactgggtcgccagccacaccatcgagcactccgaccactcgaacgtctacccgctc
gtcaacgacctcgccacgctcacctggctggggcaggtcgcagcgctcgagatccacgtg
ccgcagtggcggttcgggccgcggggcgcccagcgcaaccccgatcgcctggtcttggac
ctcgatcctggtgagggtgtcggcctgcccgagtgcgtcgccgtcgcccaagagctcaag
aagatcgtcgatggcatgggcctcggcctcatgccggtgaccagcggcagcaagggcatc
cacctctatgccgcgctcgacggcaagcagagcccgcagcaggtcagcgacatcgcccac
gagctcgccaaggccatggaggccgaccaccccgacctcgtgctgtcgacgatgggcaag
caggatcgccgcggcaaggtgttcttggactggtcgcagaacaacggcaacaagacgacc
atcgcgccgtactcgctgcgcgggcgtgagcaccccaccgtggccatgccgcgcacgtgg
cgcgagctggcgtcgaggacgctgcggcagatggaataccccgacgtgctgaaggcgctg
aagcgccgcggcgacccgctagccgacctgtcgtcgggcacgcccgtgcctcctggcgag
ctcgatcgcgagacgatgcacaacagcgagacgcccgtctcggcccgtgaggatcgcctc
gcgaagtaccgctcgatgcgcgacccctcgaagacccgcgagcccgtcccggccgaggcg
cccgagccgagcgacaaccagaccttcgtgatccaagagcaccacgcgacccgtctgcac
tgggacttccgcctcgagcacgacggcgtgctcgtcagctgggccctgccgaagggcgag
ccgcaggatgtcaagcagaaccacctcgctgtccagaccgaagaccacccgctcgaatac
ggcaccttcgagggcacgatcgccaagggcgagtacggcgcgggcgaggtcaccatctgg
gactccggaacgtacgacctcgagaagtggcgcgacggcaaagaggtcatcgtcgtgctg
cacggcgagcagcgcggttcgcggcgcatcgcgctcatccacacggggcacggcggcggc
gccggttcgtcgaccgccaagcaggagcacaactggctgatccaccggatgaaagacgac
gacgccgacgacgcgggctctggagggaaggcctcgcgaccctcctcgaagggcgggcac
caggatcctgcgccccgccctcaaacgaagcgcacgacccgcaagcggccggtcggcgac
cccgtgcagccgatgctcgcgagcccgggcgacgccgccgccatcggcgacgccagcgac
tgggcgtacgagatgaagtgggacggcgtgcgcgcggtcgtcaccgtgcacgacggcgcc
gtcacgctgacgagccgcaatggtcacgacatgtccgcgtcgtacccggagttcgacggt
ctgcccgaccgcctcggcgacgtcggcgacgctgtgctcgacggcgagatcgttgcggtc
gaccgcaacggccggcctgacttcgggctgctgcagacccggatgaagctgacccgcccg
cgcgacgttgagcgtgtgcgcgagacggcccccgtgcggctgctgctcttcgacgtgatg
tcgctcgacgggcagtcgctcgaagacgacgactacgacacgcgccgcgcggccctccag
aaggccgtcgagctgaagccccgcgacaagacgatcgacgtgccgcccgcgttcgagggc
tcgctcgccgaggcgatgtcgttctcgaagcggttgaagctcgagggcgtcgtggccaag
cgccgcgacagtggctattcggccggccgccgcagccgcgcctggatcaagctcaagcac
cacgcgacgcaggaggtcgtgatcgccggctggcgccccggggccgggcgtcgcgcgaac
ggcgtcggctcgctgctgatgggcctgccgaccgacgagggcctgaagtacgtcggccgc
gtgggcaccggcttcagcgacaaggagctcgacgagttgctgccgaccttcgggcgcgag
gcgcgcaagacctcgccactcgtcgacgtgccgacggcggacgcccgtgacgcgcactgg
atcacggcgtcgcgcgtcggtgaggtcgagttcgccgagtggacgtcgaccgggcgcctc
cgccagccgtcgtggcgcggctggcgccccgacaaagacgtcgaccaggtcgtccgcgag
tcaggagacccctcgcgcgcatcgtag

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