Frondihabitans sp. PAMC 28766: AX769_10440
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Entry
AX769_10440 CDS
T04281
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
frp
Frondihabitans sp. PAMC 28766
Pathway
frp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
frp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AX769_10440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frp03400
]
AX769_10440
Enzymes [BR:
frp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AX769_10440
DNA repair and recombination proteins [BR:
frp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AX769_10440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AMM20489
UniProt:
A0A126YZR1
LinkDB
All DBs
Position
complement(2156635..2159181)
Genome browser
AA seq
848 aa
AA seq
DB search
MATKGRGERVSVGGHTLQLTNLDKVLYQATGTTKGDVIAYYAAVAEWMLPHTEDRPATRK
RWVNGVDGEVFFEKNLPDSAPDWVASHTIEHSDHSNVYPLVNDLATLTWLGQVAALEIHV
PQWRFGPRGAQRNPDRLVLDLDPGEGVGLPECVAVAQELKKIVDGMGLGLMPVTSGSKGI
HLYAALDGKQSPQQVSDIAHELAKAMEADHPDLVLSTMGKQDRRGKVFLDWSQNNGNKTT
IAPYSLRGREHPTVAMPRTWRELASRTLRQMEYPDVLKALKRRGDPLADLSSGTPVPPGE
LDRETMHNSETPVSAREDRLAKYRSMRDPSKTREPVPAEAPEPSDNQTFVIQEHHATRLH
WDFRLEHDGVLVSWALPKGEPQDVKQNHLAVQTEDHPLEYGTFEGTIAKGEYGAGEVTIW
DSGTYDLEKWRDGKEVIVVLHGEQRGSRRIALIHTGHGGGAGSSTAKQEHNWLIHRMKDD
DADDAGSGGKASRPSSKGGHQDPAPRPQTKRTTRKRPVGDPVQPMLASPGDAAAIGDASD
WAYEMKWDGVRAVVTVHDGAVTLTSRNGHDMSASYPEFDGLPDRLGDVGDAVLDGEIVAV
DRNGRPDFGLLQTRMKLTRPRDVERVRETAPVRLLLFDVMSLDGQSLEDDDYDTRRAALQ
KAVELKPRDKTIDVPPAFEGSLAEAMSFSKRLKLEGVVAKRRDSGYSAGRRSRAWIKLKH
HATQEVVIAGWRPGAGRRANGVGSLLMGLPTDEGLKYVGRVGTGFSDKELDELLPTFGRE
ARKTSPLVDVPTADARDAHWITASRVGEVEFAEWTSTGRLRQPSWRGWRPDKDVDQVVRE
SGDPSRAS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaagggcgaggcgagcgcgtcagcgtgggcgggcacaccctccagctgacg
aacctcgacaaggtgctctaccaggcgaccggaaccaccaagggcgacgtcatcgcctac
tacgcggccgtcgccgagtggatgctgccccacaccgaggatcgcccggcgacccgcaag
cgctgggtcaacggtgtcgacggcgaggtcttcttcgagaagaatctgcccgactccgca
cccgactgggtcgccagccacaccatcgagcactccgaccactcgaacgtctacccgctc
gtcaacgacctcgccacgctcacctggctggggcaggtcgcagcgctcgagatccacgtg
ccgcagtggcggttcgggccgcggggcgcccagcgcaaccccgatcgcctggtcttggac
ctcgatcctggtgagggtgtcggcctgcccgagtgcgtcgccgtcgcccaagagctcaag
aagatcgtcgatggcatgggcctcggcctcatgccggtgaccagcggcagcaagggcatc
cacctctatgccgcgctcgacggcaagcagagcccgcagcaggtcagcgacatcgcccac
gagctcgccaaggccatggaggccgaccaccccgacctcgtgctgtcgacgatgggcaag
caggatcgccgcggcaaggtgttcttggactggtcgcagaacaacggcaacaagacgacc
atcgcgccgtactcgctgcgcgggcgtgagcaccccaccgtggccatgccgcgcacgtgg
cgcgagctggcgtcgaggacgctgcggcagatggaataccccgacgtgctgaaggcgctg
aagcgccgcggcgacccgctagccgacctgtcgtcgggcacgcccgtgcctcctggcgag
ctcgatcgcgagacgatgcacaacagcgagacgcccgtctcggcccgtgaggatcgcctc
gcgaagtaccgctcgatgcgcgacccctcgaagacccgcgagcccgtcccggccgaggcg
cccgagccgagcgacaaccagaccttcgtgatccaagagcaccacgcgacccgtctgcac
tgggacttccgcctcgagcacgacggcgtgctcgtcagctgggccctgccgaagggcgag
ccgcaggatgtcaagcagaaccacctcgctgtccagaccgaagaccacccgctcgaatac
ggcaccttcgagggcacgatcgccaagggcgagtacggcgcgggcgaggtcaccatctgg
gactccggaacgtacgacctcgagaagtggcgcgacggcaaagaggtcatcgtcgtgctg
cacggcgagcagcgcggttcgcggcgcatcgcgctcatccacacggggcacggcggcggc
gccggttcgtcgaccgccaagcaggagcacaactggctgatccaccggatgaaagacgac
gacgccgacgacgcgggctctggagggaaggcctcgcgaccctcctcgaagggcgggcac
caggatcctgcgccccgccctcaaacgaagcgcacgacccgcaagcggccggtcggcgac
cccgtgcagccgatgctcgcgagcccgggcgacgccgccgccatcggcgacgccagcgac
tgggcgtacgagatgaagtgggacggcgtgcgcgcggtcgtcaccgtgcacgacggcgcc
gtcacgctgacgagccgcaatggtcacgacatgtccgcgtcgtacccggagttcgacggt
ctgcccgaccgcctcggcgacgtcggcgacgctgtgctcgacggcgagatcgttgcggtc
gaccgcaacggccggcctgacttcgggctgctgcagacccggatgaagctgacccgcccg
cgcgacgttgagcgtgtgcgcgagacggcccccgtgcggctgctgctcttcgacgtgatg
tcgctcgacgggcagtcgctcgaagacgacgactacgacacgcgccgcgcggccctccag
aaggccgtcgagctgaagccccgcgacaagacgatcgacgtgccgcccgcgttcgagggc
tcgctcgccgaggcgatgtcgttctcgaagcggttgaagctcgagggcgtcgtggccaag
cgccgcgacagtggctattcggccggccgccgcagccgcgcctggatcaagctcaagcac
cacgcgacgcaggaggtcgtgatcgccggctggcgccccggggccgggcgtcgcgcgaac
ggcgtcggctcgctgctgatgggcctgccgaccgacgagggcctgaagtacgtcggccgc
gtgggcaccggcttcagcgacaaggagctcgacgagttgctgccgaccttcgggcgcgag
gcgcgcaagacctcgccactcgtcgacgtgccgacggcggacgcccgtgacgcgcactgg
atcacggcgtcgcgcgtcggtgaggtcgagttcgccgagtggacgtcgaccgggcgcctc
cgccagccgtcgtggcgcggctggcgccccgacaaagacgtcgaccaggtcgtccgcgag
tcaggagacccctcgcgcgcatcgtag
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