Fervidobacterium riparium: IB67_01995
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Entry
IB67_01995 CDS
T08552
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
frr
Fervidobacterium riparium
Pathway
frr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IB67_01995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frr03400
]
IB67_01995
DNA repair and recombination proteins [BR:
frr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IB67_01995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IB67_01995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_22
SWI2_SNF2
UB2H
AAA_25
AAA
Kinesin
AAA_16
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
UXF00381
LinkDB
All DBs
Position
complement(444965..446953)
Genome browser
AA seq
662 aa
AA seq
DB search
MLYELVSDYKPSGDQPQAIEKLVEGLRRGHRFQTLIGVTGSGKTFTMANVIKEIERPVLV
ISPNKTLAAQLYTEFKSFFPNNKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARM
RMSAIKSIMTRRDVVVVASVSAIYACGDPRDFDKLNVKLSVGERVNLNELLKHLVRIGYE
RKEDVGLTGSFRIRGDTLEIFPTYQDEGIHIELFGDEVDRIYTFDRLNREILERLDRITI
YPTKEYVTTEEKIAIAVKNIEEELQERLVELRRHGKELEAQRLYQRTMNDIELLSTLGYC
TGIENYSRHFDGRKPGEPPYSLLDYYDEDYLVIIDESHITIPQLRAMYHGEMSRKKSLVD
YGFRLPCAYDNRPLKFEEFLNKVNQVIFVSATPGPFEMEVSEQVVEQIIRPTGLIDPLVE
VRPTRYQVDDLVKEIVEVKKRGERALVTVLTKKTAEMLAEYLVEFNIRALYLHSELDAIK
RVEVLKKLRSGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRTAR
NENGKVLMYADRITPAMQKAIDETNRRRKIQMEYNEKHGIKPQTIIKPMMEDIFAPFKDK
EEEYYKVYEDSVFSLRESLSLEDYAALLEEEMYKAASELRYEDAAKIRDELFKVKEELKN
KK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgaattagtgagcgattacaaaccttccggtgaccagcctcaagcgatagag
aagcttgttgaaggcttacgaagaggtcacagattccaaacgctcataggcgtgactgga
agcggtaaaacatttacaatggcgaatgtgataaaggagatagaacgacccgtccttgtt
atttcgccaaacaagacactcgcagcgcagctctacacagagttcaaatcgtttttccca
aacaacaaagtagaattcttcataagctattacgactactaccaaccagaagcgtatgta
ccaacgaaagatttgtacatagaaaagagtgcagatataaatgacgttattgcaaggatg
aggatgagtgcgattaaatcaataatgacgagaagggacgtagtcgttgtagcgagcgtc
tccgcaatctatgcctgcggtgatccacgcgatttcgacaagctcaacgtaaagctttcc
gtaggtgagcgagttaacctcaacgaactgctcaaacaccttgtaaggataggttacgaa
cgcaaagaagacgtcggactcactgggagttttagaataaggggcgatacgctcgagatc
ttcccaacttatcaggacgagggcatacacatcgaactttttggcgatgaagtcgacagg
atttacacgttcgatagattgaacagggagatactcgaacgcctcgacagaataacgata
tatccaacaaaagagtacgtgacaaccgaagaaaagattgctatcgctgtgaagaatatt
gaagaagaactccaagaacgccttgtggaattaagaaggcatggtaaagagctcgaggcg
caaaggctttatcaaaggactatgaacgatattgagcttctttctacgcttgggtactgc
acgggtatagagaactattcaaggcacttcgatggaaggaaacctggagaaccgccgtac
tcgctcctcgattactacgatgaagattatctggtgataatagacgaatcgcacataacg
ataccacagctcagggctatgtatcacggagagatgtcgcgcaaaaagagtcttgtcgac
tacggtttcagactcccttgtgcatacgacaacagaccgttgaagttcgaagagtttctg
aacaaagtcaaccaggtgatattcgtatccgcaacgccgggacctttcgaaatggaagtc
tcagaacaagttgtggagcagataatacgcccaaccggattgatagatccgcttgttgaa
gtgagacccacaagatatcaggtcgacgaccttgtaaaagaaattgtagaggtcaaaaag
cgtggtgaaagagcgctcgtaacggtacttacgaaaaagaccgcggagatgcttgcagaa
taccttgttgaattcaacatacgtgccctctatttgcactcggaactcgatgcgataaaa
cgcgttgaggttcttaaaaaattacgttcaggtgaaatcgacgtcgttgtgggtgttaac
ttgctcagggaaggtttggacctgccggaagtttcgctcgtagcaatactcgatgctgat
acagaaggcttcttgcgcagcgaaactacactgatacagattataggtaggactgccaga
aatgaaaatggaaaagtcctgatgtatgctgacaggataacaccggctatgcaaaaagca
atagacgagacaaacaggcgaagaaagatccagatggagtataacgaaaagcacggcata
aaaccgcagaccataataaagccgatgatggaagacatcttcgccccgttcaaagataag
gaggaagaatactacaaagtctacgaagacagcgttttcagtctcagagaatcgctttcc
ttagaagactacgctgcgctcttagaagaagagatgtacaaagcggcatctgaactcaga
tatgaagacgcagctaaaatcagagatgaactttttaaagtgaaagaggaactgaagaac
aaaaaataa
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