Frondihabitans sucicola: GCM10025867_35180
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Entry
GCM10025867_35180 CDS
T09158
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fsb
Frondihabitans sucicola
Pathway
fsb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM10025867_35180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsb03400
]
GCM10025867_35180
Enzymes [BR:
fsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM10025867_35180
DNA repair and recombination proteins [BR:
fsb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM10025867_35180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDZ51277
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All DBs
Position
3274768..3277227
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AA seq
819 aa
AA seq
DB search
MAKAERVTVGGHVLSLTNLDKVLYPATGTTKRDVLAYYAAVAEWMIPHTEGRPATRKRWV
NGVDGEVFFEKNLPDSAPSWVARHSIEHKDHENVYPLVDDLATLTWLGQVAALEIHVPQW
RFGPRGAERNPDRIVLDLDPGEGVGLAECVFVAQEMRGILRDMGLDPVPVTSGSKGIHVY
AALDGKQTTDQVSEVAHELARALEADHPDLVLSTMGKQDRRGKVFVDWSQNNGNKTTIAP
YSLRGREHPTVATPRTWRELASKSLHHLEYPEVLRLLKRRGDPMAGLSSGTPVPPGELGD
DHRNTEHPVPVDSAGDGRPDRLAKYRSMRDPAKTREPVPSDAPPASDGQSFVVQEHHARR
LHWDFRLEHDGVLVSWALPKGEPQDTTQNHLAVQTEDHPLEYGTFEGTIAKGEYGAGEVT
IWDSGSYELEKWRDGKEVIVVLHGEQRGSRRIALIHTGHGGGKADSNWLIHRMKDDDAQD
PAPSRPSARSRTHSPKTTALKSTDPMLASPGAESDVGDPDEWAVELKWDGVRAIVTVHDG
SVTLTSRNGHDMTPSYPEFASLGERLGDVADAVLDGEIVAVDKQGRPDFGLLQTRMKLTR
ARDVERVRATAPVRLLLFDVLSLGGTPLVGESYDDRRAALVDAVDADPVIDVPPAFEGDL
ASAMEFSKKLRLEGVVAKRRDSTYSIGRRSRAWIKIKHHATQEVVIAGWRPGAGRRADGV
GSLLMGIPSDDGLRYVGRVGTGFSDRDLDDLLTAFRSSARKTSPLVGVPRADARDAHWIT
PSRVGEVEFAEWTSTDRLRQPTWRGWRPDKDPADVVRES
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcagaacgagtgacggtcggtggacacgtcctgtcgctgaccaacctcgac
aaggtcctctaccccgcgaccgggacgaccaagcgcgacgtgctcgcctactacgccgcc
gtggccgagtggatgatcccgcacacggaaggccgtccggccacgcgcaagcggtgggtg
aacggcgtggacggcgaggtgttcttcgagaagaacctgcccgattccgcgccgtcgtgg
gtcgcccggcactcgatcgagcacaaggaccacgagaacgtctatccgctcgtcgacgac
ctggcgacgctgacctggctcggccaggtcgcggcgctcgagatccacgtcccgcagtgg
cgtttcggaccccggggcgcggaacgcaatcccgaccggatcgtgctcgacctcgacccg
ggcgagggggtcgggctcgcggagtgcgtattcgtggcgcaggagatgcgcgggatcctg
cgcgacatgggtctcgaccccgttcccgtcacgagtgggagcaaagggatccacgtgtac
gccgccctcgacgggaagcagacgaccgaccaggtgagcgaggtggcgcacgagctggcg
agggctctggaggcggatcaccccgacctcgtcctgtcgacgatgggcaagcaggatcgg
cgcggcaaggtcttcgtggattggtcgcagaacaacggcaacaagacgacgatcgcgccg
tactcgctccgcggccgggagcacccgaccgtcgcgaccccgcggacctggcgcgaactc
gcctcgaagtcgcttcaccacctcgagtacccggaagtcctgaggctcctcaagcgccga
ggcgacccgatggccgggctctcgtcaggaaccccggtgccgccgggcgaactcggcgac
gaccaccggaacacggagcatccggtacccgtcgactccgcgggcgacggccgcccggat
cgcctcgcgaagtaccggtcgatgcgtgaccccgccaagacccgcgagccggtcccctcc
gacgcgccgcccgcgagcgacgggcagtcgttcgtcgtccaggagcatcacgcccggcgc
ctgcactgggacttccggctggagcacgacggcgtgctggtcagctgggcgctgccgaag
ggcgagccacaggacacgacgcagaatcacctggcggtgcagacggaggaccacccgctc
gaatacggcacgttcgagggcaccatcgcgaagggcgagtacggcgccggagaagtcacg
atctgggactccggctcgtacgagctcgagaagtggcgcgacggcaaagaggtgatcgtc
gtccttcacggcgagcagcgcggcagcaggcgcatcgccctgatccacaccggccacggc
ggaggcaaagccgacagcaactggctcatccaccggatgaaggacgacgacgcccaggat
cctgcgccctctcgcccttcggcacgatcccgcacgcactcgccgaagacgaccgcgctg
aagagcaccgaccccatgctcgccagccccggtgccgaatcggacgtcggggatcccgac
gagtgggccgtcgagctgaagtgggacggcgtgcgggcgatcgtgaccgtgcacgacggc
tcggtgacgctgacgagtcgcaacggccacgacatgacgccgtcgtacccggagttcgcc
tcgctcggcgagcggctgggggacgtcgccgacgccgtcctcgacggcgagatcgtcgcg
gtggacaagcagggccgtccggacttcgggctgctgcagacccgcatgaagctcaccagg
gcgcgagacgtggagcgcgtgcgcgcgacggcaccggtgcggctgctgctgttcgacgtg
ctgtcgctcggtggcactcccctggtcggcgagagctatgacgaccggagagcggcactc
gtcgacgccgtcgacgccgacccggtgatcgacgtcccgccggcgttcgagggcgacctc
gcctcggcgatggagttctcgaagaagctcaggctcgagggcgtcgtcgcgaaacggcgc
gacagcacgtactcgatcgggcgtcgaagccgcgcctggatcaagatcaagcaccacgcg
acgcaggaggtcgtgatcgcaggctggcggcccggtgcagggcggcgcgcggacggcgtc
ggctcgctcctgatgggcatcccgagtgacgacggcctgcgctacgtgggccgcgtggga
accggcttcagcgatcgcgacctcgacgacctgctcaccgccttccgctcgtccgcccgg
aagacgtctcccctcgtcggcgtcccccgagcggacgcccgcgacgcgcactggatcacg
ccgtcccgggtcggcgaggtcgagttcgccgagtggacctcgaccgaccgcctccgccag
ccgacctggcgcggctggcgccccgacaaggatccggccgacgtggtccgggagtcctga
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