Flavobacterium sediminis: DI487_07900
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Entry
DI487_07900 CDS
T06625
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fse
Flavobacterium sediminis
Pathway
fse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DI487_07900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fse03400
]
DI487_07900 (mfd)
Enzymes [BR:
fse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DI487_07900 (mfd)
DNA repair and recombination proteins [BR:
fse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DI487_07900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWM13793
UniProt:
A0A2U8QUK0
LinkDB
All DBs
Position
complement(1702246..1705599)
Genome browser
AA seq
1117 aa
AA seq
DB search
MSKTDILHLYEKSGTVSAINEALTNRRKIDVTGLTGSSLSFVLTALFRKSELPFLLLFND
KEEAAYYLNDLETLINKDDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAII
VSYAEAVFEKVVTRKELEKNTLKIQTGENLSIDFINETLFEYNFKRVDFVTEPGEFSVRG
GIVDVFSFSNDNPYRIEFFGDEVDSIRTFDVETQLSVEKLKKISIIPNVENKLLQENRES
FLEYIHEKTVLIVQNTEFLGHQLDKLFTKANEAFEKLSTDIKHATPEELFVNQSSFLKRA
LDFSVIELDKKPVFKTDRSFTFHTLPQPSFNKQFDLLLNNLNENHFNGYTNYLCCSNENQ
ASRFHDIFESIDEQQHENNRKQYKTIVLPLYQGFIDEENRIVCYTDHQIFERYHKFNIKN
GYSKKQTITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGAPPKIYKLGSNAWKTLKQKTKARVKHIAFNLIQLYAKRRLDKGF
QYAPDSYLQKELESSFIYEDTPDQIKATADVKTDMESERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAYQHYRTFSERLKDMPVTVSYLNRFRSAKQKSETLKGLEE
GKVDIIIGTHQLVNKNVKFKNLGLLIIDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIETQVVRFNEEIIRDAVSYEIQRGGQVYFIHNRVEN
IKEVAGMIQRLVPGAKVGIGHGQMEGKKLEELMLAFMEGDFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDEARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYEAENDI
ETKEFVKEIQIDSDFELLFPDEYINNITERLNLYNELSNIKTEAELEVFEQQLSDRFGSL
PKPAVALLNSVRIKWKATAMGIEKLVLKQGKMVGYFISDQQSDFYQSNRFMKVLQFAQQN
GNICKIKEKQTKNGLRLLLTFDHVKSINKALELLKAF
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaaaccgatattttacatttatacgaaaagagcggaacggtttctgctattaat
gaagcacttaccaatcgaagaaaaatagatgtgaccggacttaccggatcttctctttcg
tttgtccttaccgctttatttcgcaaaagcgaactaccttttctattactcttcaatgac
aaagaagaagcggcctattatttgaacgatctagaaacactgatcaataaagacgatgtg
ttgttttatccgggttcttaccgtaggccttatcaaattgaagagacggataatgccaat
gtattgcttcgtgctgaagttctgaaccggatcaattcccgtaaaaagccggccatcatc
gtttcgtatgctgaggctgtttttgaaaaagtggtaacccgaaaggaattggaaaaaaat
acgctcaaaattcagaccggtgaaaatttatctattgatttcataaatgaaaccttattt
gagtacaactttaagcgtgttgattttgtaacggaacccggtgagttttctgttcgaggg
ggaattgtcgatgttttttctttttctaatgataatccctatcgtatagagttctttggt
gatgaagtagacagcatcaggacatttgatgtggaaacccaactttccgttgaaaagcta
aagaagatcagcattatccctaatgttgaaaacaaattgctacaagagaacagggaaagt
tttttagaatacatccatgaaaaaacagtattaatcgttcaaaacactgagtttttaggc
catcagctcgataagttatttactaaagctaatgaagcatttgaaaaactatcaactgat
attaaacacgccacaccggaagaattatttgttaatcaaagttcttttctgaaaagagct
ttggatttttcagttatagaattagataaaaaaccagtttttaaaacggataggtctttt
acgtttcatactttacctcaaccgtcattcaacaaacagtttgacctgttattgaataac
ctgaatgagaatcacttcaacggttataccaattatctatgttgttctaatgaaaatcag
gcttctcgttttcatgatatttttgaaagtatagacgagcagcaacatgaaaacaatcgc
aaacaatataaaaccattgtactccctttataccaagggttcatagatgaagaaaaccgg
attgtttgttatacagatcatcaaatctttgaacggtatcacaaattcaacattaaaaac
ggttattccaaaaagcaaaccatcacgctaaaagagttgacctcactttctgtcggggat
tacgtaacacatatagatcacgggatcgggaagttcggcggactgcaaaaaattcaggtt
gaaggtaaaactcaggaagctatcaaactggtttatgccgacaatgatattgtctatgta
agtattcattctttacataagatatctaaatataacggaaaagacggagcgccgcccaag
atttacaaactgggtagtaacgcctggaaaaccctaaagcaaaaaaccaaagcccgggtt
aaacatattgctttcaatcttattcagttgtatgctaaaagacgtttggacaagggtttt
cagtatgctcctgatagttatttacagaaagaattagaaagttcctttatttatgaggat
actccggatcaaataaaagctactgccgatgtaaagaccgacatggaaagtgaaagacca
atggatcggttggtttgcggagatgtaggtttcggaaaaacagaagttgccataagggct
gcttttaaagccgttgataatggaaaacaggttgctattttagttcctactactatttta
gcttatcaacattaccgtactttctcagaacggttaaaagacatgccggttacagttagc
tacctgaatcgtttcagaagtgccaaacaaaaatcagagactttaaaaggcttagaagaa
ggcaaagtagatattattatcgggacacaccaactggtgaataaaaatgtgaaatttaaa
aacttaggcttattaatcattgatgaggaacaaaaattcggtgtaaatgtaaaagacaaa
ttaaaaacgatcgctactaatgttgataccttaaccttaacagcaacacctattccgcga
acgcttcagttctcattaatggctgccagagatttatcggttattactactccgccgcct
aatcgttatcctatagaaacgcaagtggttcggtttaatgaagaaatcatacgcgacgct
gtttcgtatgagatccaaagaggcggacaagtttatttcattcacaatagggttgaaaac
atcaaagaagttgccggtatgatccagcgattggttccgggagctaaggttggcataggt
cacggtcaaatggagggcaaaaagctagaagaactaatgctcgcttttatggaaggtgat
tttgacgttttggtagccacaaccattattgaaagcggcctagatgttcctaatgcgaat
actatctttattaacaatgcaaataatttcggtctttctgacctgcatcagatgcgaggg
cgagttggtcgaagcaataaaaaggctttttgttattttatcactcctccttattcggca
atgaccgatgaagcccgtaaacgtatacaagctttagagcaattcagtgaattaggaagt
ggttttaacattgccatgaaagatcttgaaattcgtggtgctggtgatcttctgggtggt
gagcaaagcggttttatcaacgagatcggttttgatacctaccaaaaaataatgaatgaa
gctattgaagagcttaaagaaaatgaatttaaagatctgtatgaagctgaaaacgacatt
gagaccaaagagtttgtaaaagaaattcagatcgattctgattttgaattgttatttccc
gatgagtatatcaataatatcacagagcgtttaaatctctataatgaactaagcaatatt
aagactgaagctgaacttgaggtttttgaacaacagctatcggatcgtttcggttcgtta
cctaaaccggccgttgctttactcaatagtgttcggattaaatggaaagccactgcaatg
ggtattgaaaagctggttttaaaacaaggtaaaatggtaggttattttatcagtgaccag
caaagtgatttttatcaaagcaaccgttttatgaaagtgttacagtttgcccaacaaaat
ggcaacatctgtaaaataaaagaaaaacaaaccaaaaacggtttgcgccttcttttgact
tttgatcatgtaaaaagtattaataaagcattagaattattaaaagctttttaa
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