Flaviflexus salsibiostraticola: EJO69_09390
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Entry
EJO69_09390 CDS
T05752
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EJO69_09390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsl03400
]
EJO69_09390
Enzymes [BR:
fsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EJO69_09390
DNA repair and recombination proteins [BR:
fsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EJO69_09390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZN30496
UniProt:
A0A3Q8WUD8
LinkDB
All DBs
Position
complement(2019984..2022593)
Genome browser
AA seq
869 aa
AA seq
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MSHSLDRPPPCRKVERQRHGVYSQRTLEKGTAVAHGKKFQVGERSLSVTNLGKVMYPETG
TTKAEVIHYYLAVADAILPLLRGRPVTRKRWVDGVGTAEEPGEVFFRKDLEDSAPSWIPV
GKITHSSRINRYPLVEEPATLAWFAQVAALELHVPQWRFGRNGQPRNPDRLVLDLDPGPG
VGLIECAEVARWCREILDDMGMETYPVTSGSKGIHLYAPLEGAHNSDAISSVAKELARAL
EADHGDLVVSEMKKAKRTGKVFVDWSQNSASKTTISPYSLRGRLRPTVAAPRTWEELDEP
DLDHLVMEQVLDRLADGFDPIAPLAAGSEAETVDRLTTYRSMRNPEKTAEPVPADPPRPR
TLDEGDLPSFVIQEHHARRLHWDFRLEHSGVLVSWAVPKSPPLEKDTNRLAVMTEDHPLE
YGTFEGTIAPGEYGAGEVTIWDAGVYEREKWREGKEVIVVLHGRPDGGLGGVPRRYALIN
APGMGEDKNWLIRLMNDQPDEDTSASDGTDTGTSKDTGSTTATGPRSKPSDRPRTDPQPT
VSVSDLPAPMLATRGTPAEIARSIADGEEWAFEMKWDGYRIITGVDTGGGLALASRNGKD
LTHAFPAGIELVELLQGEAGEQGGAVLDGELVALDEQGRPDFGLLQASIKDGEAAELRYM
VFDILQLGPPGPGAGRSLVRTPYRERREILLDSLAAGEAIAIPPAHTGRLELAQRVSREL
GLEGVVAKRIDSTYLSGQRGSAWIKLKLQIHQEVVIVGARHGADNPDRIRSLLVAVPDGE
GDLVYAGRVGTGFTQAQLAEIKKRLERIRRKTPPIAGIPDADRRDAWWVTPKLVAEVSIA
GRTRGGSVRHAVWRGWREDKAPGDVRWEV
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacagcctagacagaccgcccccttgccgaaaggttgagcggcaaagacatgga
gtctactctcagagaacgctcgagaaaggaacggccgtggcccacgggaagaagttccag
gttggcgagcgctcactgtcggtcaccaatctgggcaaggtgatgtaccccgagacgggg
acgaccaaggctgaggtcatccactattacctcgccgtggccgacgcgattctcccgctc
cttcgcggcaggcccgtcacccgcaagcgatgggtcgacggtgtcggcaccgccgaggag
cccggcgaggtcttcttccgcaaggatctcgaggattccgcgccctcctggatcccggtc
ggcaagatcacccactcgagtcgcatcaaccgctacccgctcgtcgaggagccggccacg
ctcgcgtggttcgctcaggtggcggccctcgagctgcacgtgccgcagtggcgattcggc
cggaacggccagccccgcaatcccgaccggctcgtcctcgatctcgaccccggacccggc
gtcgggctgatcgaatgcgcggaggtggcccgctggtgccgcgagatcctcgatgacatg
gggatggagacgtacccggtcacctcgggctcgaaggggattcacctgtacgccccgctc
gagggcgcccacaactctgacgcgatctcctccgtcgccaaggagcttgcccgagccctc
gaagccgaccatggcgacctcgtcgtgtcggagatgaagaaggcgaagcgaaccgggaag
gtcttcgtcgattggagccagaacagcgcctcgaagacgacgatcagcccctattcgctc
cgcggtcgcctcaggccgaccgtcgccgctccccgcacgtgggaggagctcgatgagccc
gacctcgaccatctggtgatggaacaggtcctcgatcgcctggccgacgggttcgacccg
attgcgccgctcgctgcgggatcagaagcggagacggttgatcggctcaccacgtacagg
tcgatgaggaacccagagaagacggctgagcccgtaccagcggatccccctcgaccccgc
acccttgacgagggcgacctgccatctttcgtcattcaggagcatcacgcccggcgcctc
cactgggatttccgtctcgaacactcgggagttctcgtctcgtgggcggtgccgaagagc
cctccgctcgagaaggacaccaaccgcctggcggtcatgaccgaggaccaccctctcgag
tacggcacgttcgagggcacgatcgccccgggcgaatatggtgccggggaggtgacgatc
tgggacgcgggcgtctatgagcgtgagaagtggcgcgagggcaaagaggtcatcgttgtc
ctccacggcaggccagatggagggctcggcggggtcccacggcgctacgcccttatcaac
gctccgggcatgggcgaggacaagaattggcttatccgactcatgaacgatcagccggac
gaagacacctcggcctctgacggcacagacacgggcacctcgaaggacacggggtctaca
acggccacgggtccccggtcgaagccctcggacaggccgcggactgacccccagccgacc
gtcagcgtgagcgaccttccggcgcccatgctcgccacccgcggcacacccgctgagatc
gcgcgcagcatcgccgacggcgaggaatgggcattcgagatgaagtgggacggctaccgc
atcatcaccggcgttgacacgggaggcggactcgccctcgcaagtcggaacggcaaagac
ctgacacacgccttccccgcgggaatcgagctcgttgagctgttgcagggtgaggccggc
gaacagggcggagcagtcctcgacggggagctggtcgccctcgacgagcaggggcggccc
gactttgggctcctgcaggcctcgatcaaggatggcgaggccgctgagctgcgctatatg
gtcttcgacatcctccaactcgggccgcccggtccaggcgcgggccgctccctcgtgagg
actccctaccgcgagcgccgggagatcctgctggactcccttgccgccggggaggccatt
gccatcccacccgcacacaccggccggcttgagctcgcccagcgggtgagccgcgagctc
ggcctggagggcgtcgtcgccaagagaatcgactccacgtatctctcgggccagcgaggc
tccgcctggatcaagctcaaactccagatccatcaagaggtcgtcatcgtcggcgcccgg
cacggggcggacaatccagaccggatcaggtcccttctcgtcgcggtcccggacggggag
ggggatctggtctacgccgggcgggtcggcactggattcacccaggcccagctggcggag
atcaagaagcggctggaacggatcagacggaagactccgccgatcgcgggtatacccgac
gctgacaggagggacgcgtggtgggtgacgccgaaactcgtcgccgaggtgtcgattgcc
ggtcggactcgaggcggcagcgtgcgccacgccgtgtggcgcgggtggcgcgaggacaag
gcacccggtgacgtgcgatgggaggtctga
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