Candidatus Fukatsuia symbiotica: CCS41_07855
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Entry
CCS41_07855 CDS
T06003
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCS41_07855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsm03400
]
CCS41_07855
Enzymes [BR:
fsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCS41_07855
DNA repair and recombination proteins [BR:
fsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCS41_07855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
MFD_D3
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWK14408
UniProt:
A0A2U8I5K5
LinkDB
All DBs
Position
1625706..1629158
Genome browser
AA seq
1150 aa
AA seq
DB search
MSPRIERYSLPQHRSGTRQLGQLVGAAYAIECAEIIDRHTGLVVLITTDMQSALRLRDEI
PQFSTQPISILADWETLPYDSFSPHQDIISSRLSCLYQLPTMDCGVIILPINTLMQRVCP
HEFLHSHALLMKKGQHLSRDKLRAQLEQAGYRSVDQVIEHGEFATRGALLDLYPMGSEEP
YRIDFFDDEIDSLRLFDTDSQRTLSEVKQINLLPAHEFPTDKAAIELFRCQWREKFEVRR
DVEHVYQQVSKGIWPVGIEYWQPLFFSQPLPTLFSYLPENALLINVGDLVAPATAFWQDI
NQRYQSRRVDPMRPLLAPDALWLDINTLFSQLKRWPRIQLKSETLTTKSTNTNLSYQPLP
ILTIQAQQKAPMDNLRCFSEQFSGSLVFSVESEGRKESLQTLLARIKLHPVVISQLSQAT
KPGHYLMIGAAECGFLDTEQQRALICESDLLGKRVNRRHQDNRRTINTDTLIRNLAELNP
GQPVVHLEHGVGRYLGLTTLETGGIQAEYLILIYAGEDKLYVPVSSLSLISRYCGGTDEN
APLHRLGGDVWNRARKKAAEKIRDVAVELLDIYAQRAAKPGFKFQQNDEQYSLFCQGFPF
EPTADQEQTIHAVLNDMCQPLVMDRLVCGDVGFGKTEVAMRAAFLAFINNKQVAVLVPTT
LLAQQHFDNFRDRFATWPVRIEMLSRFRSPKEQQAILQQASEGKIDIIIGTHKLLQADLR
WKDLGLLIIDEEHRFGVRHKERIKAMRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDALVLREAILREILRGGQVFYLYNEVENIEKAAEKLAKLVPEAVIA
IGHGQMRERDLERVMNDFHHHRFNVLVCTTIIETGIDVPCANTIIIERADRFGLAQLHQL
RGRVGRSHHQAYAYLLAPHVKQMTGDAQKRLEAIALLEDLGAGFALATHDLEIRGAGELL
GEDQSGQMTTIGFSLYMEILENAVDALKAGREPSLEDLLRYQTEIEMRMPVLLPDTFIPD
VNIRLSLYKRIANAANNAELNELKVELIDRFGSLPDATLYLLQTASLRQQAQKLGIKRIE
SNECGGFIEFGANHHIDPSHLIGLLQHQPQIYRLEGPTKLKFMQDLSDRTQRLKFVEELL
STFEQHLITV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccacgaatagagcgttactcattaccccagcaccgcagcggtacacgtcagtta
ggtcaattagtcggcgccgcttatgctattgaatgtgcagagatcatcgatcgtcatacc
ggattagtggtgttaattactacggatatgcaaagcgcactgcgattgcgtgatgaaatt
ccgcaattttctacacaacctatttctatccttgccgattgggaaaccttgccttacgac
agtttttctccacatcaggatattatttcctctcgcttatcttgcctttatcaattaccc
acaatggattgtggtgttattattttaccgatcaatacgttgatgcaacgtgtttgtcct
catgaatttcttcacagtcatgcgctgctgatgaaaaaagggcaacatctttcccgtgat
aaattacgtgctcaacttgaacaggcaggctaccgtagtgttgatcaggtgattgaacac
ggtgaatttgctacccgtggagccttgttagatctctacccaatgggcagtgaagaacct
tatcgtattgattttttcgatgacgagatcgatagtttgcgcctatttgatactgattca
caacgcacattatcagaagtcaaacaaattaacctgttacccgcccatgagtttcctacc
gataaagcggctatcgaattgtttcgttgccaatggcgagaaaaatttgaagtacggcgt
gatgtagagcatgtttatcaacaagttagtaaaggtatttggcctgtcgggatcgaatat
tggcagccactgtttttcagtcaacctctaccgacattatttagctatttgccagagaat
gccttgttgattaatgtcggcgatttggtcgcccctgccaccgctttctggcaagatatc
aaccaacgctatcagagccgtcgagtggatccgatgcgccccttactcgcacccgatgca
ttatggctcgatatcaacacacttttttctcaactgaaacggtggccacgtatacagcta
aagagtgaaacactgacaactaaaagcactaataccaatttgtcttatcaacctctgcca
atattgacaatacaggctcagcaaaaagcccctatggataatttgcgttgttttagcgaa
caatttagcggcagcctagtattttcagtagaaagtgaaggccgtaaagaaagcttacaa
acgctattggcacgaataaaactccacccagtcgtaattagtcagctctcacaagcaaca
aaacccgggcattatctgatgattggcgccgctgaatgcggtttccttgatactgaacaa
caacgtgcgttgatctgtgaaagtgatttactcggtaaaagggttaaccgtagacaccaa
gacaatcgacgcactattaataccgacacgctgatccgtaacctggcagaattaaaccca
ggtcaacctgtagtgcatttggaacacggtgtaggacgttatctcgggctgacaacattg
gaaacgggcggcattcaagcggaatacctgatactgatctatgcgggtgaagataaactt
tatgtccctgtttcctccctgtctcttatcagtcgctattgtggtggcacagacgaaaat
gcaccgttacataggcttggtggcgatgtttggaaccgggcacgaaaaaaagcagcggaa
aaaatacgtgatgttgccgttgaattgctggacatttacgcccagcgtgccgctaaacct
ggctttaaatttcaacagaatgatgaacagtactctctattttgccaaggttttccattc
gaacccacagccgatcaagaacagactattcatgctgtattgaacgatatgtgccaaccc
ttagtcatggatcggttggtatgtggtgatgtcggtttcggaaaaacagaagtcgccatg
cgtgctgcatttttagcctttatcaataacaaacaggtcgcagtattagtaccgacaacc
ctgctcgcacaacagcattttgataattttcgtgatcgtttcgctacttggccagtacgg
atagaaatgttgtcccgctttcgtagtcccaaggaacagcaagccattttgcaacaagcc
agcgaaggtaaaatcgacattatcatcggcacacataaattattgcaagcggatctacgc
tggaaagatctggggttattgattatcgatgaagaacatcgtttcggtgtgcgccataaa
gaacggatcaaagccatgcgcactgatgtcgatattcttacgctgactgccacgcctatc
ccacgtacgctaaatatggcaatgagtggaatgcgtgatttatcgatcattgctacgcca
ccggcgcggcgtctggcggtaaaaactttcgtacgagaatatgacgctttagtgctacgt
gaagcgattctgcgtgaaatattacgaggtgggcaagttttttatctgtataacgaagtc
gaaaacatcgaaaaagcggcagaaaaactggcaaaattggttcccgaagccgtgattgct
atcggtcatgggcaaatgcgtgaacgggatcttgagcgagtcatgaatgattttcatcat
caccgctttaacgttttagtctgtaccaccattattgaaaccggaatcgacgttccctgc
gctaataccatcatcattgaacgtgccgatcgcttcggtttggcacaacttcatcagcta
cgcggtcgcgtggggcgttctcaccatcaagcttatgcctatctgctagctcctcatgta
aagcaaatgactggcgatgctcagaaacgccttgaagccatcgctttgttggaagattta
ggtgctggctttgctttggcgacacatgatctggaaattcgcggggcaggtgaattattg
ggtgaggatcaaagtggtcagatgacaaccatcggcttttctctttatatggaaatactg
gaaaacgcggttgatgcgttgaaagctgggcgtgaaccctcgctagaagatctgcttcgt
tatcaaacagaaattgaaatgcgcatgccggtattactgccggatacgtttatccctgat
gtcaatattcgtttatcactttataaacgtattgcaaatgcagcgaataacgcagagctg
aatgaattaaaagtcgagttaatcgatcgtttcggatctttacctgacgccactctctat
ctattgcagacagcctcattacggcaacaagcacaaaaattggggataaaacggatcgaa
agtaatgaatgtggcggatttattgaatttggtgctaaccatcacatcgatccgagtcat
ctaattggattactacaacatcaaccacagatctatcggttagagggtcccacaaaactt
aaatttatgcaggatctgagcgacagaacacaacgattaaaatttgttgaggagttattg
tcgaccttcgaacagcatcttattaccgtatag
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