Candidatus Fukatsuia symbiotica: CCS41_10320
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Entry
CCS41_10320 CDS
T06003
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCS41_10320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsm03021
]
CCS41_10320 (rpoC)
03400 DNA repair and recombination proteins [BR:
fsm03400
]
CCS41_10320 (rpoC)
Enzymes [BR:
fsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCS41_10320 (rpoC)
Transcription machinery [BR:
fsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCS41_10320 (rpoC)
DNA repair and recombination proteins [BR:
fsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCS41_10320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AWK14778
UniProt:
A0A2U8I6K6
LinkDB
All DBs
Position
complement(2174776..2178996)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQAKTEEFDAIKISLASPDMIHSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEHRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMNLEAECEKLHEELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPR
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMLLTGPKEAERVYRMG
LASLHARVKVRISEEVRNTEGETLNQTSIVDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISRMLNTCYRIMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPQKKEEIIKEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEKVCNRQGEWEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTRDGIVMIPVIEGGDVKEPLRERVL
GRVTAEEILKPGTADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKSKGKLKL
SNVKCVTNGVGKLVIISRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVVTEVGGFIRFTDMVDGQTITRQTDDLTGLSSLVILDSAERTGGGKDQRPALKI
VDAKGEDVLIPGTDIPAQYFLPGKAIVQLEDGVQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVECGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRQLATEGKIEATYTRDLLGITKSSLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERMRGRLQGEKSL
VQPVSEDEATANFAELLNAGFANKKE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttttaaaagcacaagctaaaactgaagaatttgatgccatt
aagatttccttggcatcgccagacatgatccattcgtggtcgttcggtgaagttaaaaaa
ccggaaaccattaactatcgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
attttcggtccagtgaaagattacgagtgcctttgtggtaaatacaagcgtttaaaacac
cgtggtgtcatttgtgagaaatgtggtgttgaagtgacccaaactaaagtgcgccgggag
cgtatggggcatatcgagctggcttctcccaccgcacacatttggttcttgaaatcgcta
ccctcgcgcatcggcttgttactcgatatgccactacgtgatatcgaacgcgtactctac
tttgaatcttatgtcgttgttgaaggcggaatgaccaatctggaacaccgtcaaatattg
actgaagaacagtatctcgatgcgttggaagaatttggcgatgaattcgatgcgaagatg
ggtgccgaagctatccaggctctgttgaaaaatatgaatctggaagccgaatgcgagaaa
cttcacgaagaacttaacgaaaccaattctgagaccaaacgtaagaaactgactaaacgt
attaagctgttagaagcatttatccagtcaggtaacaagccagagtggatgatactgacc
gtgttgccggtgttacctcccgacctgcgtccgttagtgcctttggatggtggtcgtttt
gcgacttctgatttaaacgatctctatcgtcgtgtgatcaaccgtaataaccgcctgaaa
cgtctgttggatcttgcagcgcctgacattatcgtacgtaatgaaaaacggatgttgcaa
gaagcggttgatgccctgctggataatggtcgtcgtggtcgtgctattactggatcgaat
aagcgtccgttgaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccggcaa
aacttactaggtaaacgtgttgattattccggtcgctcggttatcacggtaggcccacgc
ctgcgtctgcatcagtgcggtttaccgaagaaaatggcgcttgaactgttcaaacctttt
atttatggcaagttagagttgcgtggtttagcgacgacgattaaagcggccaaaaagatg
gtggaacgcgaggaagctgtggtatgggatatcctagatgaggttatccgtgaacatcct
gtgctactaaaccgagcacccacactgcaccgtttagggatccaggcgtttgaaccggtt
ctgattgaaggtaaagctatccaactgcatccgttggtgtgtgcggcttataatgccgac
ttcgatggtgatcagatggctgtacacgtacccttgacactggaagctcagttggaagcc
cgtgcgttgatgatgtcgactaataacatcttgtcaccggcgaacggcgaacccatcatc
gttccttcgcaggatgttgttttggggctgtactacatgacccgtgattgtgttaacgcc
aaaggcgaaggcatgttactgacggggccgaaagaagcagagcgtgtgtaccgtatgggg
ctggcttcactacatgcgagggtgaaagtccgtatttctgaagaggtacgtaacactgaa
ggcgaaacccttaaccaaactagtattgtcgatacgaccattggtcgtgccattttgtgg
atgattgttccgaaaggtttgccatattctatcgttaatcagccgctaggcaaaaaagcc
atttctaggatgttaaacacttgctatcgcatcatgggactgaaaccaacggttattttt
gctgaccaaatcatgtacaccggttttgcttatgccgcacgttcaggtgcgtcggttggt
atcgatgatatggtcattccacagaaaaaagaagagatcatcaaagaagcggaaaccgag
gttgctgagatccaagaacaattccagtcaggtcttgttactgctggtgaacgttacaac
aaggtgattgatatttgggcagcggctaacgaacgtgtcgctaaggcgatgatggaaaac
ttgtcagtcgaaaaggtttgcaatcgtcagggtgaatgggaaaaacaagtttccttcaac
agtatttttatgatggcggattccggtgcgcgtggttctgcagcgcaaatccgtcagttg
gctggtatgcgtggtttaatggcgaaacctgacggttctatcattgagacgcctatcacg
gctaacttccgtgaaggtttgaacgtactgcaatacttcatttcaactcacggtgcacgt
aaaggtttggcggataccgcattgaaaacggcaaactctggttatctgacccgtcgtttg
gttgacgtggcacaggatctggtagtgaccgaagatgactgtggtactcgcgatggtatt
gtgatgataccggttattgaaggtggtgatgttaaagagccgttgcgtgaacgtgtattg
ggtcgtgtgaccgcagaggaaatccttaagccgggtacggctgatattctggtgccgcgt
aacactttgttaaacgaaaaatggtgtgatctgttagaagaaaactcggttgacagtgtt
aaggtacgctccgtagtaagttgtgaaactgattttggtgtttgtgctaattgctatggt
cgtgatctggcgcgtggtcacattattaataaaggtgaggcggtaggtgttatcgctgcg
cagtccatcggtgagccgggtacccagcttaccatgcgtaccttccatattggtggtgcg
gcatcgcgtgctgcggcagaatcgagcattcaggttaagagcaaaggtaagttaaaactc
agtaacgttaaatgcgttactaacggtgtgggtaaactggttattatttcacgtaatact
gagcttaaactgatcgatgaattcggccgtaccaaggaaagctacaaagttccctacggt
gcggtgatgggcaaaggtgatggagccgaagttaatggcggcgaaacagtcgctaactgg
gatccgcatactatgccagtggtcactgaagtcggtggtttcattcgcttcactgatatg
gttgatggtcagactattactcgtcagactgatgatctgactggcttgtcttctctggtg
atactcgatagtgcagagcgtactggtggtggtaaagaccaacgtccggcgttaaaaatc
gttgatgccaaaggtgaagatgtcttgatcccagggacggatatccctgcgcaatacttt
ttgccgggtaaagccattgtccaattggaagatggtgttcagatcggtgcgggagacact
ctggcacgtattccacaagaatccggtggtactaaagatatcactggtggcttgccgcgg
gttgctgatttgtttgaagcacgtcgcccgaaagaacctgctattctggctgaaatcagt
ggaattatctcgtttggtaaggaaactaaaggaaaacgtcgtctagtgatctcacctttg
gatggtagtgacgcttatgaagagatgatccccaaatggcgccaactcaacgtattcgaa
ggtgaagtagtagaatgcggtgatgtcgtctccgatggcccagaatcgccacacgatatt
ttgcgcctgcgtggtgtgcatgcggtaacacgttacattactaatgaagtgcaggaagtg
taccgtctccagggtgttaagattaacgataaacatattgaggttatcgttcgtcaaatg
ttgcgtaaaggcactatcgttagcgccgggggaactgactttctggaaggcgaacaggca
gaaatgtcgcgtgttaaaatcgctaaccgccagttggcaactgaaggtaagatcgaggcg
acttatacccgtgatctattgggtatcaccaagtcctctttggcgacagagtcctttatt
tctgcggcttcgttccaggaaaccacgagggtattaaccgaagcggcggtagcaggtaag
cgtgatgaactgcgtggtttaaaagaaaatgtgatcgtaggtcgattgatcccagccggc
accggttacgcttatcatcaggaacgtatgcgtggccgtctgcaaggagaaaagtcgctt
gtacagccggtgagtgaagatgaggcgacagcgaattttgctgagttacttaatgcgggt
tttgctaacaagaaagagtaa
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