Flavobacterium sangjuense: GS03_00721
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Entry
GS03_00721 CDS
T06656
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsn
Flavobacterium sangjuense
Pathway
fsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GS03_00721 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsn03400
]
GS03_00721 (mfd)
Enzymes [BR:
fsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS03_00721 (mfd)
DNA repair and recombination proteins [BR:
fsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GS03_00721 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
LPD39
Motif
Other DBs
NCBI-ProteinID:
QBZ97235
UniProt:
A0A4P7PRT6
LinkDB
All DBs
Position
complement(806584..809946)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSLTSLYNGYLHSTKVKQITDVLENPLTKIQLKGLLGSSFSFVFQAIFKQSDKPFLLIFN
EKEEAAYYLNDLEQMIGANDVLFYPSSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IVTYPEALFEKVVTRKELEKNTLKIAVGETVTIDFINEVLFEYEFKRVDFITEPGEFSVR
GGILDVFSFSNDNPYRIEFFGNEVDSIRTFDVETQLSLEKQTKITIIPNLENKFVQENRE
SFLDYISDKTVLCIENTEFLTSQLDKLFGKAIETFDKLSKDVKHAEPKHLFLNQEGFLRK
ALDFSIIELSNKPLFQTTKSFEFHIQPQPSFNKQFDLLLNNLSDNHFNGYTNYLFCSNEG
QANRFHDIFESIDEENHENIRKQYHTIVASLYQGFIDEENQIACYTDHQIFERYHKFNIK
NGYSKKQTLTLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLAYADNDIVY
VSIHSLHKISKYTGKDGTPPKIYKLGSNAWKTLKQKTKARVKHIAFNLIQLYAKRRLEKG
FACAPDSYLQKELESSFIYEDTPDQITATQDVKADMEKDRPMDRLVCGDVGFGKTEVAIR
AAFKAVDNSKQVAILVPTTILAYQHYRTFTERLKDMPVNIGYLNRFRTAKQKAKTIEDLA
SGKLDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIP
RTLQFSLMAARDLSVITTAPPNRYPIESKVVGFSEELIRDAVSYEIQRNGQVFFINNRIE
NIKEIAGMIQRLVPDARVGIGHGQMEGNKLEELMLGFMNGEFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSVMTDDARKRIQALEQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKIMNEAIEELKENEFKELYESEND
IDTKEYVKELQIDTDFELLFPDEYINNITERLNLYNELGTIKDEAGLLAYEAKLIDRFGA
LPKEAKALLNSIRIKWIATQMGIEKIIMKQGKLIGYFVGDQQSDYYNSKQFRQMLQFVQQ
HGNICKMKEKETKNGLRLLLTFENVKSINKALEFMEMMKK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttaacttcattatataacggttatctccattcgacgaaagtcaaacaaataacg
gatgtactcgaaaatcctttgaccaaaattcagttaaaaggacttttgggctcgtctttc
tcgtttgtatttcaggctatttttaagcaaagcgacaaaccgtttctgttaatttttaac
gaaaaagaagaagcggcctattatttaaacgatttggaacaaatgattggtgccaatgat
gtgttgttttatccaagttcctatcgtcgtccataccaaattgaagaaaccgacaacgct
aatgttttattgcgttccgaagttttaaaccgaatcaattcgagaaagaaaccagccgtt
attgttacgtatcccgaagcgctttttgaaaaagtagttacccgaaaagaactcgaaaaa
aacaccttgaaaattgctgttggcgaaacggttaccatcgattttatcaacgaagtgttg
tttgaatacgaattcaaacgtgtcgattttattaccgaaccaggagaattttctgttcgt
ggcggaatcctagatgtgttttctttttccaatgacaatccgtatcgtattgagtttttt
ggaaatgaagttgacagtatccgaacctttgatgtcgaaacgcagctttcactcgaaaaa
caaaccaagattacgattatcccaaatctggaaaataaattcgttcaggaaaatcgcgaa
agctttttagattatatcagcgacaaaactgttttatgtattgaaaacacagagttcctg
acttcacaattagacaaactttttggcaaagcgatagaaacttttgacaaactttcgaaa
gacgtcaaacacgctgaacccaaacatttattcctgaatcaggaaggttttttacgcaag
gctttggatttttctatcattgaattatcgaacaaaccgttgttccaaacgaccaaatct
tttgaattccacatacaacctcagccatctttcaacaaacaatttgatttgttattgaac
aatttgagcgacaatcattttaatggttataccaattatttgttctgttcgaatgaaggg
caagccaatcgttttcatgatatttttgaaagcattgatgaagaaaaccacgagaatatc
cgcaaacaataccatacaattgtagcttctttgtaccaaggtttcattgacgaagaaaac
caaattgcctgctatactgaccatcagatttttgaacgttatcacaaattcaacatcaaa
aatggctattctaaaaagcaaacacttacgctaaaagaactgaattcattatctgttggc
gattatgtaactcacatcgatcatggaataggaaagtttggtggcttgcagaaaattcag
gtcgaaggcaaaacacaggaagcaataaaactcgcttacgccgataatgacatcgtgtat
gtgagcattcattcgctgcacaaaatttcgaaatacaccggaaaagacggaacgccacca
aagatttacaagcttggttcgaatgcctggaaaaccttaaaacaaaaaaccaaagcgcgt
gtcaaacacattgcttttaacttaattcagctatatgcaaagcgccgtttggaaaaaggg
tttgcctgcgcacctgacagttatttacagaaagaattagaaagttcattcatttacgaa
gatacaccagaccaaattacggccacacaagacgtcaaagccgacatggaaaaagaccgc
ccgatggaccgattggtttgtggcgatgttggtttcgggaaaacagaagtcgctattcgt
gccgcttttaaggctgttgacaatagtaaacaagtcgcgattttggttccgactacaatt
ttggcgtaccaacattaccgaacttttaccgaaaggttaaaagatatgcctgtcaatatt
ggttacctcaaccgtttccgaaccgccaaacagaaagcaaaaaccatagaagatttggct
tcggggaaattggatattcttattggcacacatcaattggtgaataaaaatgtagtcttt
aaagatttaggtttgctgattgttgacgaagaacaaaagtttggcgtcaacgtaaaagac
aaactgaaaaccattgcagcgaatgttgatactttaactttaaccgcaacgccaattccg
agaaccttgcaattttcattgatggcagctcgggatttatcggtaattactacagctccg
ccaaatcggtatccgatagaatcaaaggttgttggttttagtgaagagttgattcgtgat
gcggtttcgtatgaaattcaaagaaacggacaggttttctttatcaataatcgaatcgaa
aacatcaaagaaattgccggaatgattcaacgattggttcccgatgctcgtgtcggaatc
ggtcacggccaaatggaaggcaacaaacttgaagaattaatgctaggatttatgaatggt
gaattcgatgttttggtggcaaccacaattatcgaaagtggattggatgtgccaaatgcg
aatacgattttcatcaacaatgctaataattttgggctttctgatttgcatcaaatgcgt
ggtcgcgttggtcgaagcaataaaaaagcattctgttattttatttgtccgccttattct
gtgatgacggatgatgcccgaaaacgtattcaggcattagaacaattcagcgaattggga
agtggttttaatatcgcgatgaaagatttggaaattcgtggtgccggagatttattgggt
ggcgagcaaagtggtttcatcaatgaaattggttttgaaacctatcagaaaatcatgaac
gaagccattgaagagttgaaagaaaatgaattcaaagagctttatgaatcagaaaatgat
atcgataccaaagaatatgtaaaagaattgcagattgataccgacttcgaattactgttc
ccggatgaatacatcaacaacattacagaacgtttaaatctgtataacgaactgggaact
atcaaagatgaagctggattgttggcctacgaagccaaactaattgaccgttttggggca
ttgccaaaagaagcaaaagcactcttgaacagcatccgaatcaaatggattgcaacgcaa
atgggaattgaaaaaatcatcatgaagcagggcaaattgattggttattttgtgggcgac
caacaatcggattattataattcaaagcaattcagacaaatgcttcagtttgttcagcaa
catggaaacatctgcaaaatgaaagagaaggaaaccaaaaacggattgcgtctattactc
actttcgaaaacgtaaaatccataaacaaagcattagagtttatggaaatgatgaagaaa
taa
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