Candidatus Protofrankia datiscae: FsymDg_0750
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Entry
FsymDg_0750 CDS
T01530
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FsymDg_0750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsy03400
]
FsymDg_0750
Enzymes [BR:
fsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FsymDg_0750
DNA repair and recombination proteins [BR:
fsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FsymDg_0750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AEH08266
UniProt:
F8AVS8
LinkDB
All DBs
Position
879752..883468
Genome browser
AA seq
1238 aa
AA seq
DB search
MTLAPLLDALTATPGADPALARAVAAVGEPRLDLSAPAALRPFAAAALAVRGGRPVLAVT
ATGREADDLAAALSSLIDPDTVAVFPSWETLPHERLSPRADTVGLRLAVLRRLAHPDSTG
RPPLSVVVASVRAVLQPQVAGLGDLEPVTLAVGDSADLGEVVDRLVGVAYHRVDLVERRG
EIAVRGGILDVFPPTEEHPLRVEFFGDEVEDIRPFSVADQRALSGPSDDQNSRDRRDGRR
QLFAPPCRELLLTPPVRARARELAQAHPELLDMLDRIADGIPVDGMEALAPVLCDEMVLM
LDELPAGTHVLVCDPERVRARATELVRTSHEFLEASWSTAAGGGSAPIDLGAAAYRSIAQ
VRQRAGEIDLPWWSIGPFGGAGVTIDDHPGGDQLGSGGSRGGASGASSTGGRPGGDGRPD
DYQTWDAAAGEDDFDDHTVVSSLRPAAAYHGDTARALADIKGWLADSWRVLLVTEGPGPA
QRLVELLRDADLGARLAEDADLARGVATVTCGQLGSGFTSDLLGIAVLTETDLAGQRGVT
TRDMRRMPHRRRKGIDPLALRAGDLVVHDAHGVGRYIEMVTRTVAGATREYLVLEYAKGD
RLYVPTDQLEQVTRYVGGEGPSLDRIGGADWAKRKGRARKAVKEIAGELIRLYSARMAAP
GHAFGPDTPWQRELEDAFPFRETPDQLSAIEEVKADMRKPVPMDRVICGDVGYGKTEIAV
RAAFKAVQDGKQVAVLVPTTLLVQQHFQMFSERYAAFPVNVRAMSRFNSASEQKAVLDGL
SDGTVDVVIGTHRLLSSTSRFKDLGLVIVDEEQRFGVEHKEYLKKMRTAVDVLTMSATPI
PRTLEMSITGIRELSTIDTPPEERHPILTFVGPSDNRQVAAAIRRELLREGQVFFIHNRV
ESIDAAAARLRDLVPEARVATAHGQMGEDALEQVMVAFWEKKFDVLVCTTIVESGLDISN
ANTLVVERADVFGLSQLHQLRGRVGRGRERAYAYFLYPPDKPLTETAHDRLATIAQHSDL
GAGMAVAMKDLEIRGAGNLLGGEQSGHIASVGFDLYVRMVGEAVANFKGTVVEEPPEVKV
ELPVNASLPHDYVPSERLRLDAYRRLAAAVSDDDIAEVRAELLDRYGTLPEPAENLLAVA
SLRVLARRYGVTEITVAGRQIRFAPLELRESQTMRLQRLYKGAVVKPTVRTVLVPAPPET
PRIGARPLRDRAVLTWAAQLLAAVAGDSVAAAATAASR
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgccccgctgttggatgccctcaccgccaccccgggtgcggatccggccctg
gcacgcgcggtcgccgcggtcggtgagccccggctggacctgtcggccccggcggcgttg
cgcccgttcgccgccgccgcgctcgcggtccggggcggccggccggtgctggccgtcacc
gccaccgggcgggaggccgacgatctcgccgcggcgctgtcgagcctgatcgatcccgac
acggtcgcggtgttcccgagctgggagaccctgccgcacgaacggctgtccccgcgggcc
gacaccgtcgggctgcgcctcgccgtgctgcgacggctggcccaccccgacagcaccggc
cggccgccgctgtcggttgtggtggcgtcggtgcgggccgtcctgcagccccaggtcgcc
ggcctcggcgaccttgaaccggtgacgctggccgtcggtgacagcgccgacctgggcgag
gtcgtggacaggctcgtcggggtcgcctaccaccgggtcgacctggtggagcggcgcggc
gagatcgcggtgcgcggcggcatcctcgacgttttcccaccgaccgaggagcatccgctg
cgggtggagttcttcggcgacgaggtcgaggacatccgaccgttctcagtggccgaccag
cgggcgctgtccggcccgtccgacgaccagaacagccgggacagacgggacggacggcgc
cagctgttcgcgccgccgtgccgtgagctgctgctcaccccaccggtccgggctcgggcc
cgggagctggcacaggcgcatcccgaactgctcgacatgctcgacaggatcgcggacggc
atcccggtggacggcatggaggcgctcgcgccggtgctctgcgacgagatggtgctgatg
ctcgacgagctgcccgccggcacgcacgtgctggtgtgcgacccggaacgggtccgggcc
cgggccaccgagctggtgcgcacgagccacgagttcctggaggcgtcctggagcacggcc
gccggcggtggcagcgctccgatcgatctcggcgcggcggcctaccggtcgatcgcgcag
gtgcgccagcgggccggggagatcgacctgccgtggtggtcgatcggcccgttcggcggt
gccggcgtcaccatcgacgaccatccgggcggcgaccagctcggcagcggcggttccagg
ggcggcgcatccggggccagcagcaccgggggccgcccgggtggtgacggccgtcccgat
gactatcagacgtgggacgcggccgccggcgaggatgatttcgacgaccacacggtggtc
tccagcctgcggccggccgccgcctaccacggcgacaccgcgcgggcgctcgcggacatc
aagggctggctcgccgactcctggcgggtcctgctggtgaccgaggggcctggccccgcc
cagcggctcgtcgaactgctgcgggacgccgacctgggcgcccgcctcgccgaggacgcc
gacctcgcccgtggcgtggccacggttacctgcggccagctgggcagcggcttcaccagc
gacctgctgggcatcgcggtcctgaccgagaccgacctcgccggccagcgtggcgtgacc
acccgtgacatgcgccggatgccgcaccggcgccgcaagggcatcgacccgctcgcgctg
cgcgccggcgacctggtcgtccacgacgcccacggggtcggccggtacatcgagatggtg
acccggacggtcgccggcgccacccgcgagtacctcgtcctcgagtacgcgaagggcgac
cgtctgtacgtcccgaccgaccagctcgaacaggtcacccgttacgtcggtggcgagggc
ccgagcctcgaccggatcggcggcgccgactgggcgaagcgcaagggacgcgcccgcaag
gccgtcaaggagatcgccggcgagctgatccgcctgtacagcgcgcggatggccgcgccg
ggacacgccttcggcccggacaccccatggcagcgggagctggaggacgccttcccgttc
cgggagacccccgaccagctctcggccatcgaggaggtcaaggccgacatgcgcaaaccc
gtcccgatggacagggtcatctgcggcgacgtcggctacggcaagaccgagatcgcggta
cgggcggcgttcaaggcggtgcaggacggtaaacaggtcgccgttctcgtcccgacgaca
ttgctcgtccagcagcatttccagatgttctccgagcggtatgccgcgtttcccgtgaac
gtacgggcgatgtcgcgcttcaattccgcgtccgagcagaaggcggtgctcgacggactt
tccgacggcaccgtcgacgtggtgataggaacgcatcggctgctgtcgtccacgtcccgt
ttcaaggacctcggcctggtgatcgtcgacgaggagcagcgcttcggcgtcgaacacaag
gaatacctgaagaaaatgcggaccgcggtggacgtgctcaccatgagcgccaccccgatc
ccgcggacactggaaatgtcgatcaccggtatccgggagctgtcgacgatcgacaccccg
ccggaggagcggcacccgatcctgaccttcgtcgggccgagcgacaaccggcaggtcgcc
gccgcgatccgccgtgagctgctgcgggaggggcaggtcttcttcatccacaaccgggtg
gagtcgatcgacgcggccgcggcgaggctgcgcgacctcgtccccgaggcccgcgtcgcc
accgcgcacggtcagatgggcgaggacgccctcgagcaggtgatggtcgccttctgggag
aagaagttcgacgtcctggtatgtaccaccatcgtcgagtcggggttggacatctccaac
gcgaacaccctcgtcgtggaacgcgccgacgtgttcgggctgtcccagctgcaccagttg
cggggccgggtgggccgtggccgggaacgcgcctacgcatatttcctgtatcctccggac
aaaccgctcaccgaaaccgcgcacgaccggctcgcgacgatcgcccagcattccgacctc
ggcgccggaatggccgtggccatgaaggatctggagatccgcggggcgggcaacctgctc
ggcggggaacagtccgggcacatcgcctcggtcggtttcgacctgtacgtgcggatggtc
ggtgaggccgtcgcgaacttcaagggcaccgtggtcgaggagccgccggaggtcaaggtc
gagctcccggtgaacgcgagcctgccgcacgactacgtccccagcgagcggctgcggctg
gacgcgtaccggcgcctggccgccgccgtctcggatgacgacatcgccgaggtccgcgcc
gaactcctcgaccgttacgggacgctgcccgaaccggccgagaacctgctggcggtcgcc
tccctgcgggtgctggcccgccggtacggcgtcaccgagatcaccgtggccggccgtcag
atccggttcgcgccgctggagctgcgcgagagccagaccatgcgcctccagcggctgtac
aagggggccgtggtcaaaccgacggtgcgcacggtcctcgtgccggcgccgccggagact
ccgcgcatcggcgcccggccgctgcgcgaccgcgccgtcctcacctgggccgcccagttg
ctggcggcggtcgccggtgactcggtcgcggcggcggccacggccgcgtcccgctga
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