Francisella tularensis subsp. holarctica OSU18: FTH_0897
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Entry
FTH_0897 CDS
T00399
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor TRCF
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fth
Francisella tularensis subsp. holarctica OSU18
Pathway
fth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FTH_0897 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fth03400
]
FTH_0897 (mfd)
Enzymes [BR:
fth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FTH_0897 (mfd)
DNA repair and recombination proteins [BR:
fth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FTH_0897 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ABI82808
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Position
complement(893285..896710)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLNNQISANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN
SKVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPAS
FIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALN
STIATYIQNNEYFSGIEFYLPLFYDKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFR
YNELKHNSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANY
KLANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEVSAK
FCLIISPFQEGMIIDKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETP
DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNKASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNT
RLNIYKRISKASHQDLVNIKIELIDRFSKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT
SGKISFSNNTKFEPQKLIKLIQSQPSDFRLTKEHDLIITKVTKTAEQKIEFIENFLKKIV
Q
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccaaatatctgctaatgatacagttgtatctaatgcttatggatctgct
tttagtattttgtttaatgaatatctcaagcaaaataatcagtttaatttaatagttact
gaagattcacaacaagcacataagatatacaaagaattaaaatatctaaataaaaataat
tcaaaggtagatatcctattttttccaaatttagaaatccttccttatgataggttctca
gcttctatagatattatctctagacgccaagaaatcctatataagatgacacaccaaccc
caaaatactctaataatcacaagtatctcaaatacactaagaaaaatagcaccagcaagt
tttatacaagagcatagttttatacttaaaacaggtgataacttagatataactaaatat
aaaatgcttcttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgag
tttagtattcgtggtagtattattgatatatatcctatcggctcaaaagttgcttttaga
atagatctttttgataatgagattgatagtatcaaagagcttaatactgaaagtcaacgc
tctggtaatcaaatacaatcaatcaacataatgccatctcatgagctggtgtataacaat
caaaatactacttttgctttagataagctcaataaattatgtggtgataaagctcttaat
tcaactattgcgacatatatacaaaataatgaatattttagtggtattgagttttatttg
cctttgttttatgacaaactttctagtctttatgattatctaccaccatcgacaaatatt
cacttagttgataatattactaattcaattgaggctttctctgatgaagtaaaatttaga
tataatgaacttaagcataatagtgatagaccaattctaccctttcaagaaatcttttac
tcacaacaagaaatacaagatatctaccaacaatataaaaatattaaatggtttcaacag
ccaaaatcaaaatccaaaatacttaaagtagaccatttagaaaaaatttcagcaaactac
aaacttgcaaatccattcaaagatttacaacagtttattgataaatctaattttgacaaa
gttattttctcaactgactcaaatgggcgtgctgaactacttctagagcacttaaataag
cttaatctaaatatacaaagctgtaaaaattttaatgaagctatagaagtatctgctaag
ttctgcttaataatttcgccttttcaagaaggtatgattatagacaaaaaaattgctcta
attacagaagcagatttatttcctgaacatagctataactctaccaaagtttcacagcat
gatcaccaccctactgttgatcttaaagatcttacagatctaaaaccaggaatgcatgtt
gtgcatattgatcatggtatcggtagatatgaaggtttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtaccaatc
acatcactaaatctaatctctatttataactcttcacttactgaaaagatagcattaaat
aagcttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gtagcagcaaatcttctcgaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttaaacgaagaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcaactttcagctattaatgatgtatttaaagatatgatttcagctaaacctatggat
aggctaatctgtggtgatgtaggttttggtaaaacagagattacgatgcgagcagcattc
cttgccacacaaaatcaaaaacaagttgctattttagtacctacaacaatcttagctcaa
cagcattataatagctttaaagatagatttactaacactgctattaatatcgaagtaatt
acccgttcaaaaacttcaaaggcacagcaacaactttttgaagaccttaaaaaaggaacc
gtagatataattatcggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttattaattattgatgaagaacatcgttttggtgtcgctcaaaaggaaaaactaaaa
tcattaaaagccgagatagatattttaactatgtctgcaacacctattccgcgtagttta
agtatggcgttttcagcactaagagacttatcaattatcgcttcaccacctgccaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataatccgcgaagctgtaagt
cgtgaaactattcgtggtggacagattttttatctttataataaagttgaaactattcaa
aagaaaaaagaaattcttcaagagttgtttccacgcttacgtatagctatagctcatgga
caaatgagcgaaaaagaaatccaaaaagttatgtttgattttaaacataacaagtaccat
atattactatgtaccacaattattgagacaggtattgatataccaaatgctaatactcta
attattgaagatgctaacaatctaggtttagctcaacttcaccaactaagaggtagagtt
ggtcgatcacatcatcaagcttatgcatatatgctaataccaaataaagcaagcattacc
aaagatgcactaaaaaggcttgaggctattagtaataccgaatcactaggtggtggtttt
actttagctaatcatgatttagagattcgtggcgctggtgaaatacttggagaagagcaa
agtggtaatattgatggtattggtctaaatctatatatggatctactcgataaaacaatt
gcaaatctacgagctggtaaagagctcaatatcgaagaggttattaattctacagtctgc
gaagttgagttaaatattccaacactaattcccgattattatatttatgatgtcaacact
cgactaaacatctataaacgaatttcaaaagctagtcatcaagatttagtaaatatcaaa
attgaacttatagatcgctttagcaaattacctttagaagttctttatttacttaaagta
gcacatataaaaatagatgcgattgcattaggaatttcccaaataaaaatgtttgctaca
tctggcaaaattagtttctcaaacaatacaaaatttgaaccacagaagctgataaaactt
attcaatcacaacctagtgattttagactgactaaagagcatgatttaattataacaaaa
gttacaaaaactgctgaacaaaaaatagagtttatcgaaaactttttgaagaaaatagtt
caataa
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