Frigoriglobus tundricola: FTUN_3386
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Entry
FTUN_3386 CDS
T06871
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ftj
Frigoriglobus tundricola
Pathway
ftj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ftj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FTUN_3386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ftj03400
]
FTUN_3386
Enzymes [BR:
ftj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FTUN_3386
DNA repair and recombination proteins [BR:
ftj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FTUN_3386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJW95832
UniProt:
A0A6M5YS74
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All DBs
Position
3656756..3660160
Genome browser
AA seq
1134 aa
AA seq
DB search
MTTATLAAPAGAGLRALPEALHAADGWAELRAALAANRSGTVDGAWGSSASLAASALAAD
VPGTLLVVVPNPTDVSPWVEDIASFTGIRPAVFEAWETWPVVSNKGKLDPTTTARLRLLQ
QLQLTPPKALVCCIAAVCQPVPERADLAARGRTVTTAEIVEPSELAEWLVANGYKRVDAV
EYPGEFSRRGGICDVFPPDAPDPVRFEFFGDEVESIRTFAAGSQRSLESKTSVVLMGMAG
EEPTPNPSLKGGGRGVGSSRRAGSLTDYLPADSWVALAEPRELKDQAKHFLERVATADGL
FTPEAAFASLMKLPNVVISALPRPSVEASVHLRVESVERFSGSVHRVRDELDLVASGTSA
QVLIACQSEAEVHRLTEVLKAGKLAESHRLQLVTGHVRAGFRLVTGGRGGHPSEGIVVLG
SHEIFHKDLLPPGVKVQTRSSRQIESRAIDTFLDLNDGDYVVHVAHGIARFRGMKMLEKT
RGPEPGAGSEDAAPESPGGSAFEENLILEFRDGVFLYVPATRIDLVQKYVGGSQTEPELS
KLGGTAWARKKDRVSEAVRDMAADMIQIQAVRQAVPGFPFPADSEWQKEFEAAFPYQETP
DQLSAISEVKGDLEKAKPMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAILVPTTVLAE
QHYRTFSQRFAEYPFVVDVVNRFKGGAKQKETLKKVASGEIDVIVGTHRLLSKDVKFKDL
GLVVIDEEQRFGVEHKERLKMLRAMVDVLTMTATPIPRTLHASLLGIREISNLETPPADR
QPVETRIHRWDDQLIRGAILREMNRGGQVYFVHNRVQDIYDIATKIKILVPEAKVTVGHG
QMDAHDLEKAMVAFVRKDADILVATTIIESGLDIPNANTIFIDEADMYGLADLHQLRGRV
GRSKNRAYAYLIVNPLKLLNPTAQRRLKAIEEFTELGAGFKIAMRDLEIRGAGNILGAEQ
SGHIAAIGYELYCQLLENAVRALKQQPPKVPVEVNVDLPWPSYLPRDYVPGQKLRIEVYR
RLARLRDPAKLADFRQELRDRYGPYPEPVEWLLRTTEIRLLCVKWQVSSVHRDNRDLIFN
YRSRERAQQLVAASKGRMKIVDDKSIYMRLRPDDKDDAEGLYKLLVGTLKTNAV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggcgactctcgcggcgccggcgggtgccggactacgcgccctgcccgaagcc
ctccacgcggcggacggctgggcggaactgcgcgccgcgctggccgccaaccgcagcgga
accgttgacggcgcctgggggtcgtccgcatcgctggcggcaagtgcgctcgccgcggac
gtgcccggcacgctgctcgtggtggtgccgaacccgaccgacgtttcaccgtgggtcgag
gacatcgcctcgttcaccggtatccgccccgccgtgttcgaggcgtgggaaacgtggccg
gtcgtttccaataagggcaagctcgacccgaccacgaccgcgagactgcggttgctccag
cagctccagctcacccccccgaaggcgctcgtgtgctgcatcgcggccgtgtgccagccg
gtgccggagcgcgccgacctcgccgcccgcggccggaccgtgaccaccgccgagatcgtt
gagccgagtgaactggccgagtggctggtggcgaacggctacaagcgcgtggacgcggtg
gagtaccccggcgagttcagccgccgcggcggtatctgcgacgtgttccccccggacgcg
ccggacccggtgcggttcgagttcttcggcgacgaggtggagagcatccgcacgttcgcg
gcgggctcgcaacggagcctggagagcaagaccagcgtggtgctgatggggatggcgggc
gaagaacccacccccaacccctcccttaagggagggggccggggggtgggttcttctcgg
cgcgccggctcgctcaccgattacctgcccgccgactcgtgggtggcgctggcggagccg
cgtgagctgaaggaccaggcgaagcacttcctcgaacgcgtcgccaccgcggacggcctg
ttcacgccggaagccgcgttcgcgagcctgatgaagctgccgaacgtggtcatctccgcg
ctcccgcggccgagcgtggaggcgtcggttcacctgcgggtggaatcggtcgaacggttc
agcggcagcgtccaccgcgtgcgcgacgaactcgatttggtcgcgtcgggcacctcggca
caggtgctcatcgcgtgccagagcgaggccgaagtccaccggctcacggaggtgctgaag
gccggcaaactcgccgagtcgcaccggctccagctcgtcaccggtcacgtccgcgccggg
ttccggctcgttacgggcggaaggggggggcacccgtcggagggcatcgtcgtcctcggc
agccacgaaatcttccacaaggatctgctcccgcccggcgtgaaggtgcagacgcgctcc
agccggcagatcgagtcgcgggccatcgacacgttcctcgacctcaacgacggcgactac
gtcgttcacgtcgcgcacggcatcgcccgcttccgcgggatgaagatgctggagaaaacg
cggggcccggagcccggggcggggagcgaggacgcggcccccgagtccccgggcgggtcc
gcgttcgaagagaacctcatcctcgagttccgcgacggcgtgttcctgtacgtgccggcg
acgcggatcgacctcgttcagaagtacgtcggcgggtcgcagaccgagcccgagctgtcg
aagctcggcggcaccgcctgggcccggaagaaggaccgcgtctccgaagccgtccgcgac
atggccgcggacatgatccagatccaggccgtgcggcaggcggtgccggggttcccgttc
ccggcggactccgagtggcagaaggagttcgaggccgcgttcccgtaccaggagacgccc
gaccagctctccgccatcagcgaagtgaagggcgatctggaaaaggccaagccgatggac
cggctcatctgcggcgacgtgggctacggcaaaacggaggtcgccatccgggcggcgttc
aaggcggtcgatagcggcaagcaggtcgcgatcctcgtgccgacgacggtcctcgcggag
cagcactaccgcaccttcagtcagcggttcgccgagtacccgttcgtggtcgatgtcgtg
aaccggttcaagggcggggcgaagcagaaagaaacgctcaagaaggtcgcgagcggcgaa
atcgacgtgatcgtcggcacgcaccggctgctctcgaaggacgtgaagttcaaagacctc
gggctggtggtgatcgacgaggagcagcggttcggcgtggagcacaaggagcggctgaag
atgctccgcgcgatggtggacgtgctcaccatgacggcgacgccgatcccgcgcacgctg
cacgcgtcgctgctgggcatccgcgagatcagcaacctcgaaacgccgcccgcggaccgg
cagccggtggagacgcgcatccaccggtgggacgaccagctcatccgcggcgcgatcctg
cgcgagatgaaccgcggcgggcaggtgtacttcgttcacaaccgggtgcaggacatttac
gacatcgccacgaagatcaagatcctcgtgccggaagcgaaggtgaccgtcgggcacggg
cagatggacgcgcacgacctggaaaaggcgatggtggcgtttgtccgcaaggacgccgac
attctggtggcgacgacgatcatcgagagcggactggacataccgaacgcgaacaccatc
ttcatcgacgaggccgacatgtacggcctcgccgacctgcaccagttgcggggccgcgtg
ggccggtcgaagaaccgcgcgtacgcgtacctcatcgtgaacccgctgaagctcctgaac
ccgaccgcgcagcggcggctgaaggccattgaggagttcaccgaactcggggccgggttc
aagatcgcgatgcgggacctggagattcgcggggcggggaacattctcggcgcggagcag
agcgggcacatcgcggccatcggctacgaactctactgtcagctcctggaaaacgcggtc
cgggccctgaagcagcagccgccgaaggtgccggtggaggtgaacgtcgatctgccgtgg
ccgtcctacctgccgcgcgactatgtgccgggccagaagctccgcatcgaggtgtaccgc
cgcctcgcccggctccgcgacccggccaagctggcggacttccggcaggaactccgcgac
cgctacggcccgtacccggagccggtggagtggctgctccgcaccaccgagatccggctg
ctgtgcgtgaagtggcaggtgtcgagtgttcaccgcgacaaccgcgatctgattttcaat
taccgcagccgggagcgcgcgcagcaactcgtcgcagcgagcaagggccgcatgaagatc
gtggacgacaagagcatctacatgcgcctgcgccccgacgacaaggacgacgcggagggg
ttgtacaagctgctggtggggacgctgaagacgaacgcggtctga
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integrated database retrieval system
