Francisella tularensis subsp. holarctica PHIT-FT049: X557_04805
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Entry
X557_04805 CDS
T03033
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fto
Francisella tularensis subsp. holarctica PHIT-FT049
Pathway
fto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X557_04805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fto03400
]
X557_04805
Enzymes [BR:
fto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X557_04805
DNA repair and recombination proteins [BR:
fto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
X557_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AHH46356
LinkDB
All DBs
Position
complement(886151..889576)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLNNQISANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN
SKVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKITPAS
FIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALN
STIATYIQNNEYFSGIEFYLPLFYDKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFR
YNELKHNSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANY
KLANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEVSAK
FCLIISPFQEGMIIDKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETP
DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKHHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNKASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNT
RLNIYKRISKASHQDLVNIKIELIDRFSKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT
SGKISFSNNTKFEPQKLIKLIQSQPSDFRLTKEHDLIITKVTKTAEQKIEFIENFLKKIV
Q
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccaaatatctgctaatgatacagttgtatctaatgcttatggatctgct
tttagtattttgtttaatgaatatctcaagcaaaataatcagtttaatttaatagttact
gaagactcacaacaagcacataagatatacaaagaattaaaatatctaaataaaaataat
tcaaaggtagatatcctattttttccaaatttagaaatccttccttatgataggttctca
gcttctatagatattatctctagacgccaagaaatcctatataagatgacacaccaaccc
caaaatactctaataatcacaagtatctcaaatacactaagaaaaataacaccagcaagt
tttatacaagagcatagttttatacttaaaacaggtgataacttagatataactaaatat
aaaatgcttcttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgag
tttagtattcgtggtagtattattgatatatatcctatcggctcaaaagttgcttttaga
atagatctttttgataatgagattgatagtatcaaagagcttaatactgaaagtcaacgc
tctggtaatcaaatacaatcaatcaacataatgccatctcatgagctggtgtataacaat
caaaatactacttttgctttagataagctcaataaattatgtggtgataaagctcttaat
tcaactattgcgacatatatacaaaataatgaatattttagtggtattgagttttatttg
cctttgttttatgacaaactttctagtctttatgattatctaccaccatcgacaaatatt
cacttagttgataatattactaattcaattgaggctttctctgatgaagtaaaatttaga
tataatgaacttaagcataatagtgatagaccaattctaccctttcaagaaatcttttac
tcacaacaagaaatacaagatatctaccaacaatataaaaatattaaatggtttcaacag
ccaaaatcaaaatccaaaatacttaaagtagaccatttagaaaaaatttcagcaaactac
aaacttgcaaatccattcaaagatttacaacagtttattgataaatctaattttgacaaa
gttattttctcaactgactcaaatgggcgtgctgaactacttctagagcacttaaataag
cttaatctaaatatacaaagctgtaaaaattttaatgaagctatagaagtatctgctaag
ttctgcttaataatttcgccttttcaagaaggtatgattatagacaaaaaaattgctcta
attacagaagcagatttatttcctgaacatagctataactctaccaaagtttcacagcat
gatcaccaccctactgttgatcttaaagatcttacagatctaaaaccaggaatgcatgtt
gtgcatattgatcatggtatcggtagatatgaaggtttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtaccaatc
acatcactaaatctaatctctatttataactcttcacttactgaaaagatagcattaaat
aagcttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gtagcagcaaatcttctcgaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttaaacgaagaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcaactttcagctattaatgatgtatttaaagatatgatttcagctaaacctatggat
aggctaatctgtggtgatgtaggttttggtaaaacagagattacgatgcgagcagcattc
cttgccacacaaaatcaaaaacaagttgctattttagtacctacaacaatcttagctcaa
cagcattataatagctttaaagatagatttactaacactgctattaatatcgaagtaatt
acccgttcaaaaacttcaaaggcacagcaacaactttttgaagaccttaaaaaaggaacc
gtagacataattatcggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttattaattattgatgaagaacatcgttttggtgtcgctcaaaaggaaaaactaaaa
tcattaaaagccgagatagatattttaactatgtctgcaacacctattccgcgtagttta
agtatggcgttttcagcactaagagacttatcaattatcgcttcaccacctgccaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataatccgcgaagctgtaagt
cgtgaaactattcgtggtggacagattttttatctttataataaagttgaaactattcaa
aagaaaaaagaaattcttcaagagttgtttccacgcttacgtatagctatagctcatgga
caaatgagcgaaaaagaaatccaaaaagttatgtttgattttaaacataacaagcaccat
atattactatgtaccacaattattgagacaggtattgatataccaaatgctaatactcta
attattgaagatgctaacaatctaggtttagctcaacttcaccaactaagaggtagagtt
ggtcgatcacatcatcaagcttatgcatatatgctaataccaaataaagcaagcattacc
aaagatgcactaaaaaggcttgaggctattagtaataccgaatcactaggtggtggtttt
actttagctaatcatgatttagagattcgtggcgctggtgaaatacttggagaagagcaa
agtggtaatattgatggtattggtctaaatctatatatggatctactcgataaaacaatt
gcaaatctacgagctggtaaagagctcaatatcgaagaggttattaattctacagtctgc
gaagttgagttaaatattccaacactaattcccgattattatatttatgatgtcaacact
cgactaaacatctataaacgaatttcaaaagctagtcatcaagatttagtaaatatcaaa
attgaacttatagatcgctttagcaaattacctttagaagttctttatttacttaaagta
gcacatataaaaatagatgcgattgcattaggaatttcccaaataaaaatgtttgctaca
tctggcaaaattagtttctcaaacaatacaaaatttgaaccacagaagctgataaaactt
attcaatcacaacctagtgattttagactgactaaagagcatgatttaattataacaaaa
gttacaaaaactgctgaacaaaaaatagagtttatcgaaaactttttgaagaaaatagtt
caataa
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