Fragaria vesca (woodland strawberry): 101292683
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Entry
101292683 CDS
T02666
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101292683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101292683
03019 Messenger RNA biogenesis [BR:
fve03019
]
101292683
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101292683
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101292683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
101292683
NCBI-ProteinID:
XP_011459964
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All DBs
Position
LG3:complement(258512..264315)
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AA seq
948 aa
AA seq
DB search
MELSRENPRPLAFPATKPMPITDLAPKPPPPPTPIVDRYKALLKQRDDDLRVSPDDDVSP
PSTEEIVQLYEMLLSELVFNSKPIITDLTIIAGEQRDHGKGIADAICARILEVPVEHKLP
SLYLLDSIVKNIGRDYVRYFSSRLPEVFCEAYRQVQPNQHSAMRHLFGTWSTVFPPSVLR
RIEAQLQFSPQMNQQSSGLPPMRASESPRPAHGIHVNPKYLRQLETSNVDNVGPQRLSST
GTMSHTDFPVGSKRVQPSSAVRLARSSSPSNIGIDEYEVENSPKRFGERASPSNSVYDYR
AIRDEELSERRRKHYLDGSQNRLNNGLEHQRPRALIDAYGKDSGDRSLSDKPLHVGRLNV
NGLDHKATSMAWQNTEEDEFDWKSVGPSITKHTRSDDFFPSNVPHSRSYRPRPGLGTLNA
SSLDSDIGSTWSTQAYLPSEQSSVVAEDSVPPLSFSRGLTGRFQSDINHNQGSRHPQEPW
NMPFHPSQPSQTLLNTKEIGRNFQMPISLGGEKVSTDVDGRLHGPTSRMGSGADFVNADS
RLAIPVSVGVRPPVNVHNSHPPPVHSIFPLPNQRSQYGFINSVDNIKNQGPYKSMYMPEQ
QLDGYENKELGLAKLSQLTSQNARLIPVNQRNQAQVSPFQPQFHPHQEPPYSAAPRGYNL
QGQGGAGIANPVPRVQLGLPTHYTPNALQHLRGDSLPPLPTGPPPPIHGVFPGLKAGPVV
SSNQQGSSYTGLISSLMAQGVISLTNQSALQDSVGVEFNADLLKVRHESAITALYHDLPR
QCTTCGLRFKCQEEHRSHMDWHVTKNRMSKNRKQKPSRKWFVTTSMWLSGAEALGTDAVP
GFLPADTSAEKKSDEEMAVPADEDQNSCALCGEPFDDFYSDETEEWMYKGAVYLNAPHGS
TPGMDRSQLGPIVHAKCRPESTDVSPGVFGQDEGGTIEEGSQRKRLRS
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggagctctctcgtgaaaaccctagacctctcgcttttccggccaccaagcccatgccg
attaccgacctcgctcccaagccgccgccgccgccgactccgattgtcgaccgctacaag
gcgctgctcaagcagcgcgacgacgacctgagagtatcccccgacgacgacgtgtcgccg
ccgagcacggaggagattgtgcagctttacgagatgttgttgtcggagttggttttcaat
tcgaagccgattatcaccgatctcactatcatcgccggcgagcagcgagaccacggcaag
ggcatcgccgacgccatctgcgctcggattctcgaggtcccagtcgagcacaagctgcct
tcactatatcttttagacagtatcgtaaagaacattggccgagactatgtcagatacttc
tcttcccgtctccctgaggtcttttgtgaggcatacaggcaagttcaacccaaccagcac
tctgccatgcgccacctttttggcacttggtcaacagtgtttcctccttcagtccttcgc
aggatcgaagcgcagctgcagttttctccacaaatgaaccagcaatcatcaggtttacct
cctatgagagcatctgaatctcctcggccagcgcatggcatccatgtcaatccaaaatat
ttacgtcagttggagacctcaaatgtggataatgttggtccccaaagactaagctcaacg
ggaactatgagtcatacagattttcccgttgggtccaaacgggtacagccatcttccgct
gtcagacttgcaagatcttcgtcaccttcaaatattggcattgatgaatatgaagtagaa
aattctcctaaaaggtttggtgagcgggcatctccatctaattctgtgtatgattataga
gcaatcagagatgaagagctaagtgaaaggcggagaaaacattatcttgatggtagtcag
aaccggttaaataatggacttgaacatcaaagaccaagagctttgattgatgcatatgga
aaagacagtggggatagaagtttaagtgataagcctttgcatgttgggcggcttaatgta
aatggtctagatcacaaagcaacttcaatggcgtggcagaatactgaggaggatgagttt
gattggaaatctgttggcccatctataaccaagcacactaggagtgatgatttctttcct
tcaaatgttccacattctagaagctacaggcccaggcctggcctcggaacactgaatgca
agctccttagattcagatatcgggagtacttggtctactcaggcatacctaccttcagaa
cagtcctctgtagttgctgaagattcagtccccccgctctctttcagtcgtggactcacg
ggtagattccagtccgacataaatcataatcagggttctcgccaccctcaagaaccatgg
aatatgccttttcatccctctcagccttcacagactcttcttaataccaaagaaataggt
aggaatttccagatgcctatatcactaggtggtgagaaagtgtctactgatgttgacggg
cgacttcacggaccaacatcaagaatgggttctggtgctgactttgttaatgctgactct
cgcttagctataccagtgtcagtgggtgtaaggcctccagtaaacgtgcacaattctcac
cccccgcctgtgcattcaatttttccattgccgaaccagaggagtcagtacggtttcata
aattctgttgacaacattaaaaatcaaggtccatacaagtctatgtatatgcctgagcag
cagttggatggttatgaaaacaaggagttgggtttggcaaagctaagtcagttgactagt
cagaatgccagactcatacctgttaatcagagaaaccaggctcaggtcagtcctttccaa
ccacaatttcatccgcatcaggagccaccttattcagcggcaccacgtggatacaatttg
caaggccagggtggtgccggtatagcaaatcctgtacctcgtgtacagttgggcttacct
actcactatactccaaatgctttgcaacatttgcgaggggactccttgccgcctctaccg
accggtccccctcctcccatacatggtgtatttcctggtctaaaggctggtccagtagtc
tctagcaaccagcaagggagttcttataccggtttgattagttctctcatggctcaaggt
gtgatctcattgacaaatcaaagtgccctgcaggattctgtaggagttgagtttaatgcg
gaccttctcaaggtgcgtcacgaatctgcaataactgctctgtatcatgatctcccaaga
caatgcacaacctgtggtctccggttcaagtgccaagaggagcaccgtagtcatatggat
tggcatgtgacgaagaacaggatgtccaaaaaccgtaagcagaagccctctcgtaagtgg
tttgtaactacaagcatgtggcttagtggtgcagaggctttgggaactgatgcagttcct
ggctttttgcctgctgataccagtgcggaaaagaagagtgatgaagaaatggctgttccg
gctgatgaggatcagaattcatgtgcgttatgtggggagccttttgatgatttttatagt
gatgagacagaggagtggatgtataaaggtgctgtgtacttgaatgcacctcacgggtca
acacctggcatggataggtcacaattaggtcctatagtgcatgccaaatgcaggccggag
tccactgatgtatcccctggagtttttggacaagatgaagggggaactattgaagagggc
agtcaaagaaaacgtttgcggagttga
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