Fragaria vesca (woodland strawberry): 101303509
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Entry
101303509 CDS
T02666
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101303509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101303509
Enzymes [BR:
fve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101303509
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101303509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
101303509
NCBI-ProteinID:
XP_004297907
LinkDB
All DBs
Position
LG4:4055284..4067164
Genome browser
AA seq
1188 aa
AA seq
DB search
MNQKNEETKFSVLCSLFNWIQRSKTSALKRSKFRKFLDNFCKPSDYFAAIRLVLPNLDRE
RGSYGLKESVLATCLIDALGMSRDSDDALRLINWRKGGARTGANAGNFALVAAEVLQRRQ
GLSSGGLTINELNELLDRLASSENRTEKTSILTTLVQKTNAQEMKWIVMIILKDLKLGIS
EKSIFHEFHPDAEDLFNVTCDLKLVCEKLRNRSQRHKRQDIEVGKAVRPQLAMRVGDATA
AWKKFHGKEIVVECKFDGDRIQIHKNGGEVHYYSRNFLDHSEYGHAMSDIIIQNVQADRC
ILDGEMLVWDTSLKRFAEFGSNQEIAKAAKDGLDSDKQLCYVAFDILYVGDTSVIHESLK
ERQELLQKVVKPLTGRLEILVPNGGLNTRRSSGEPCWSLVVHTVDDVQRFFKETIANRDE
GIVIKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLA
ERPVANTYPRRFVSFCRVGTGLTDEELDAVATKLKPYLRKYDYPKKAPPSFYEVTNHSKE
RPDVWVESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRIRYDKPWHECLDVQSFIE
LVDSGNGTTQKGTGTDYGGLQDDKKKHKRISKKEEKRNLSLVPSHLVQTDVSGVKEDSLI
FSKMMFYFVNVPPTHSLDSLHKIVAENGGTFSMNLNNSVTHCVAAESKGIKYQAAKRQGD
VIHLSWVLDCCSLKKLLPLQPKYYLSISDSSKKKLEEEIDEFSDPYFWDLDLADMKQLLS
NVPRSEDAKRINYYKKKYCPMEKWSRFHGCCICFNSSIHSLKPDWEVMLGVTVRRLKIEV
LMGGGRVSDNLADATHLVLLSIQGCDVGFETLSQSLTEAEKHFLHNKRLHVVGLQWLEDC
LEKKQRLQEESYSLKPYGWEEFNIEECNHDMVLEEAPSDNVEIQKVPSASKKGRNRGNAA
QENNGILRSPERGSKRKRGRPAGTNRGKSGATQTRRTRARIGRKPAKISFHESDESDSYD
HTSFKEDVDIAEGTHEMVGDRSLDMQRNEAMKDSTSSQSGKAAEQEVVADIRFDGNSVKF
PEIEMIEKHNSQDQDNKEKLEVNDDPVQAMLLGLIPSLGTKNAQTMKMSIESEKPPVDLI
PSHGKKNVQTTSHTSAEDDKPPCDIVAEPTKKKKVSYKDLASQLLKDW
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagaagaatgaggagactaagttcagtgtgctgtgcagcctcttcaattggatc
caacgcagcaagacctccgccctaaagcgctccaagttccgcaaattccttgacaacttc
tgcaaaccctccgactacttcgccgcaatccgcctcgttctcccaaacctcgatcgcgag
cgcggcagctatggcctaaaggagtccgtcctggccacctgtctcatcgacgccctcggc
atgtcccgcgactccgacgacgccctccgcctcatcaattggcgcaagggcggcgcccgc
accggcgccaatgccggcaacttcgctctcgtcgccgccgaggtgctgcaaaggaggcag
ggacttagttccggtggactaacgatcaacgagttgaatgagttgcttgatcgtttggct
tcgagcgaaaacaggactgagaagacttcaattcttactactttggtacagaagacaaat
gctcaagaaatgaagtggatcgtcatgatcatccttaaagatctgaaattgggaattagt
gaaaagagcatcttccacgaatttcatccagatgctgaagacttgtttaatgttacctgt
gacttaaaattggtttgtgaaaagctgaggaatagaagtcaacgacataaacgacaggac
attgaagttggaaaagctgtgcgaccgcagctagctatgagagttggtgatgcaactgct
gcatggaaaaagtttcatggaaaggaaattgttgttgagtgtaagttcgatggtgatcgc
attcaaattcataagaatggaggtgaagtacattactactcgaggaactttttggatcac
tccgagtatggacatgcaatgtcagacattattatacaaaatgttcaggctgataggtgt
attcttgatggtgagatgttggtctgggacacgtctctaaagcgttttgctgagtttggt
tcaaatcaagagatagcaaaggcagcgaaggatggacttgacagtgataaacagttgtgc
tatgttgcattcgatatcctttatgttggagatactagtgtaattcacgagagcttgaag
gaacggcaggagcttctccagaaagtagtcaagcctttgacgggtcgtttagagatttta
gtacctaatggtggccttaacactcgccgttcttcaggcgaaccttgttggtcccttgtt
gttcatactgtggatgatgttcagaggtttttcaaagaaaccatagcgaacagagatgag
gggattgttataaaggaccttggttctaaatgggaacctagtgatcgtagtggaaagtgg
ttgaaactgaagccggattacattcgggctggttctgatctggatgttctgataatagga
ggatactatggttcagggcgtcgtggaggggaggtagctcagttcttggtgggtcttgct
gaacgtccggttgcaaatacttatccaagaagatttgtatcgttttgtagagtgggtact
ggacttactgatgaggagttagatgctgtggcaaccaaattaaaaccttatctaaggaag
tatgactaccccaaaaaggccccaccaagtttttatgaagtaacgaaccattcaaaagag
agaccagatgtttgggttgaaagccctgagaaatcaataatcctttccataacgagtgac
atccgaaccataaggtccgaggtttttgctgcaccatacagcctgagatttccacgtatt
gatcgaattagatatgataaaccttggcatgaatgccttgatgtgcaatcatttatagag
cttgtagattcaggtaatggtaccacacaaaaggggacagggacagattatggtggcctg
caggatgataaaaagaaacacaagaggatctctaaaaaggaagagaaaagaaatctatct
cttgttccctctcatttagttcagactgatgtttctggtgtcaaggaggacagcttaata
ttttcaaaaatgatgttctactttgttaatgtgcctccaactcattctcttgattccttg
cacaaaatagttgctgagaatgggggtactttttcgatgaatttgaataactcagtcacc
cactgtgttgcagctgaaagcaaagggattaaatatcaggcagcaaaacgtcagggagat
gtcattcatttgtcttgggtcttggattgttgttctctaaagaaactccttcctttacag
ccaaagtactacctctcaatttctgattcttcaaagaagaagttagaagaagaaattgat
gagttttctgacccgtatttctgggaccttgaccttgcagacatgaagcagctgttgagc
aatgtgcctagatcagaggatgcgaaacgtatcaactattacaagaaaaaatactgtcct
atggagaaatggtctcgatttcacggctgctgcatttgctttaactcatcaattcattcc
ctgaaaccggattgggaagtcatgttaggagttacagtacgaaggttgaagattgaagtt
ctcatgggtggtggcagagtcagtgataatcttgctgatgccacccatttggtactcttg
tcaattcaggggtgtgatgtgggattcgaaaccttatcgcaaagtttgactgaagcggag
aagcactttttgcataacaaaaggttgcatgttgttggactgcaatggttggaagactgc
ttggaaaagaagcaaagattacaagaggaatcatatagtttgaaaccctatgggtgggaa
gaattcaacatcgaagagtgtaaccatgacatggttttagaagaagcgcccagtgataat
gtggaaattcagaaggttccttctgcttctaagaaagggagaaacagaggcaatgcagct
caagaaaacaatgggatcttgcgctcgcctgagaggggtagcaaaaggaaaagaggaaga
cctgctggcacaaacagagggaaaagtggtgccacccaaactcgaagaacacgggcacgt
attggcaggaagcctgctaaaatatctttccatgagtcagacgaaagtgattcttatgat
catacatcatttaaggaagacgttgatatcgctgagggaacacatgagatggtaggtgac
agaagtttagacatgcaaagaaatgaggcaatgaaagattctacatcatcacaaagtggt
aaggcagctgaacaagaggttgttgcagacataagattcgatggcaattctgttaaattt
cctgaaattgaaatgattgagaagcataatagccaagatcaagataacaaggagaaactc
gaagttaatgatgatccagttcaagccatgttgcttggtcttattcccagtcttggaaca
aagaatgctcaaactatgaaaatgagtattgagtctgagaagccacctgtagatctgatt
ccaagtcatggaaagaagaatgtccaaaccacatcgcatactagtgccgaggatgacaag
ccaccatgtgatatagttgcagagcctacaaagaaaaagaaagttagctataaggatctt
gctagtcagctacttaaggattggtaa
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integrated database retrieval system
