Fragaria vesca (woodland strawberry): 101309025
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Entry
101309025 CDS
T02666
Symbol
GTF2H2
Name
(RefSeq) general transcription factor IIH, polypeptide 2, 44kDa
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03022
Basal transcription factors
fve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101309025 (GTF2H2)
09124 Replication and repair
03420 Nucleotide excision repair
101309025 (GTF2H2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101309025 (GTF2H2)
03400 DNA repair and recombination proteins [BR:
fve03400
]
101309025 (GTF2H2)
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101309025 (GTF2H2)
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101309025 (GTF2H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
101309025
NCBI-ProteinID:
XP_004309875
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Position
Un
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AA seq
420 aa
AA seq
DB search
MNNGDQRRLNGEIEEDEEDEENNDGLAAWERAYADERSWESLQEDESGLLRPIDNQSLHH
AQYRRRLRAATTARIQKGLIRYLYIVIDLSKAASEMDFRPSRMGVVAKHVEAFIREYFYQ
NPLSQVGLVTIKDGVSHILTDLGGSPESHVKALMGKLECSGDASLQNALDLVQGYLDQIP
SYGHREVLIMYSALSTCDPGDIMGTIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGSYY
IALDESHLKDLILEHAPPPPAIAEFAIANLIKMGFPQRAAESSVAICSCHKEAKVGDGYT
CPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSMSLYSDQQNKLPKAC
FGCQQSVLGPGNKPGLRVACPKCKQHFCLDCDIYIHESLHNCPGCDSTRHSKIPAANEGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgaccagagacgcttaaacggtgaaatcgaagaagacgaggaagacgag
gagaacaacgacggcctcgccgcttgggaacgagcctatgccgacgagcgttcctgggag
tcacttcaagaggacgagtctggcttgctccgccccattgataaccagagcctccatcac
gcccagtaccgccgccgcctccgcgccgccaccactgcccggattcagaagggtctcatt
cgttatctttacatcgttatcgacctttctaaggcagcttcagagatggattttagacct
agccgaatgggtgtggttgcgaagcatgttgaagctttcattagagagtatttctaccag
aatccgcttagtcaagtaggccttgtgactataaaagatggggtttctcatatcttaacg
gatctcggtgggagtcctgagtctcatgttaaagctctgatgggtaaactggaatgctca
ggcgacgcgtccctgcagaatgcattggatcttgttcaagggtatctagatcagattcct
tcctatggtcacagggaagttctgatcatgtattcagctctcagtacatgtgatcctggg
gatataatgggaactattcagaagtgcaagaaatctaaaattagatgctcagttattggt
ctctcagcagaaattttcatatgcaaacatctgtgccaagaaactgggggctcctattat
attgcattggatgagtcacacttaaaagacttgatattggaacatgcacctccacctcca
gcaattgcagaatttgctattgcgaatttgattaagatggggtttccacaaagagcagca
gagagctctgtggcaatttgctcatgtcacaaggaggcaaaagtcggagatggatacact
tgtccaagatgcaaagcccgcgtgtgtgagctacctaccgaatgtcgcatttgtgggttg
acactcatttcctcacctcatttggcaaggtcttatcatcatctgttcccaattgtacca
tttgatgaggtctctatgtcactatacagtgatcagcaaaacaagttacctaaagcttgt
tttggctgccaacaaagtgttcttggtccaggaaacaaacctggccttcgggttgcttgt
ccaaagtgtaagcagcacttttgccttgattgtgacatatatattcatgagagcttgcat
aactgcccaggctgtgacagtaccaggcattcaaagataccagccgcaaatgaaggagga
tga
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