Frieseomelitta varia: 122527795
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Entry
122527795 CDS
T09482
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03022
Basal transcription factors
fvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122527795
09124 Replication and repair
03420 Nucleotide excision repair
122527795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fvi03021
]
122527795
03400 DNA repair and recombination proteins [BR:
fvi03400
]
122527795
Enzymes [BR:
fvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122527795
Transcription machinery [BR:
fvi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122527795
DNA repair and recombination proteins [BR:
fvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122527795
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
AAA_11
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
122527795
NCBI-ProteinID:
XP_043508237
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MKITVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM
LENPLDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETESKPKIVGLVLSSRKNMCIHPE
VSKEREGKIVDGRCHSLTASYIRERHNYDESTPICNFYEGFDMEGKEQLMPPGIYSIDDL
KEYGRDRNWCPYFLARFTILHAQIIVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID
NVCIDSMSVKINRRSLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE
TDIILANPVLPDEILQEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD
VQTKVSIERKPLRFCAERLASLLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEP
FDDKTPNVLNPILHFVCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS
FTMTLARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT
SYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIRACENGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKLPKWIQEHLTDSLCNLSTEEAVQISKRW
LRQMAQPFTRENQLGLSLLTREQLEKEEYSKIEQKAQQN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcactgttgatggtctacttgtatattttccttatgattacatttatccagaa
caatatgcttatatgcttgagcttaaacgaggcctggatgctaaagggcactgtttattg
gaaatgccctcaggcactggcaaaaccataactctgttatcattaattgtagcatatatg
ttggaaaatccattagatgtgacaaagttaatttattgttctcgaactgtaccagaaata
gagaaagtcatagaagaattaaaaaagcttatagactattatgaaaaagaaacggaaagt
aagcctaaaattgttggcttagttcttagttcacggaaaaatatgtgtattcacccagag
gtaagcaaagaacgtgaaggcaaaattgttgatggacgttgccattctctgacagcatca
tacattcgtgagagacataattatgatgaatcaacaccaatttgtaatttttatgaagga
tttgacatggaaggtaaagaacaacttatgccaccaggcatatattctattgatgatttg
aaagaatatggaagagaccgcaattggtgtccttattttcttgcaaggtttacaatttta
catgcccagattatagtatacagttatcattatttattagatcccaaaattgcagaaact
gtgtcaaaagaattaagtaaaagttctgtggtagtatttgatgaagctcacaatatagat
aacgtatgcattgattcaatgagtgtaaagattaatagaagaagtttagaaaaaagttca
gccaatatacaacttcttgaaaaaacagtggccgagatgagagaggatgatgtaaataaa
ttaaaagaagaatatgagagattagtagaaggattaaaagatgcacatgttgcaagagaa
actgatataatattagctaatcctgttttaccagacgaaattctacaagaggtggttcct
ggtaatattaggaacgcagaacattttgtcagttttttgaaacgatttgtagaatattta
aaaacgcgtttacgtgtgcaacatgtagttcaagaatcacctgctgcattcctgagagat
gttcaaacaaaagtttcaatagaacgtaaaccattaaggttttgtgccgaacgactggct
tctctcttacgtactatggagataaccgatttaactgatttttcaccaattatattagtg
acacatcttgctacattagtatctacatatacgaaaggatttacaattattgtggagcca
tttgatgacaaaacaccaaatgttctaaatcctattcttcacttcgtttgtctagattcg
tctattgcaatgaaacctatatttgatagatttcagtcagtagtaattacatcaggaaca
ttgtctccattagacatgtatccgaaaatattaaattttcatccagtcataatgtcatct
tttactatgacattagctagaccttgtcttttacccatgattgtagcaaaaggtaacgat
caagttgcgatttcatcaaagtatgaaacaagagaagatgttgctgttataagaaattat
ggtcaactattagttgaatttgcagctactgttcctgatggtttagtctgtttttttacc
tcttacttatacatggaatctgttgttgctgcatggtatgaccaaggtgtagtagatcaa
cttcaaaggcacaaattattatttattgaaactcaggattctgctgaaacgagtttagct
cttataaattatatacgggcatgtgaaaatggaagaggtgctgttctcctttctgtagca
cgtggtaaagtatcagaaggagttgattttgatcaccatttaggaagagctgttttaatg
tttggaattccttacgtgtatacacaatcacgtattttaaaagcacgattagaatatctt
cgtgatcaatttcaaattagagaaaatgattttttaactttcgatgcaatgagacacgca
gcacaatgcgttggaagagcaattagaggaaaaactgattatggtataatggtatttgca
gacaagagattttcgagaatagataaacgaagtaaattaccaaaatggatacaagaacat
ttgactgatagtttatgtaatttgtcaactgaagaagctgtgcagataagtaaacgttgg
ttacgacaaatggctcagccatttacgagagaaaatcaattgggattatccttattgaca
cgagaacagcttgaaaaagaagaatatagtaaaattgaacaaaaggcgcaacaaaattaa
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