Frieseomelitta varia: 122532856
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Entry
122532856 CDS
T09482
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122532856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122532856
Enzymes [BR:
fvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122532856
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122532856
mRNA degradation factors
3'-5' decay
Ski complex
122532856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
MTR4_beta-barrel
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
122532856
NCBI-ProteinID:
XP_043517917
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MDVKDDKEELQFELPPIWPDIRTELREYIECLDNLPMYHLDNAQCYWPRKLDILSILNCD
IAPLGTTLKFDRDPVTGKLGEMHEVPLKSAGETARNSMSMTRAPGPPSDNIRGNTSNIPF
WPGGFDEPEIVMDSSVEEIDFENNLRTLAKGFSAGIEFKSDNCTPKERTMINTEQISSES
KINEIERIADKINLMSIIKEEQDEFNFWKTETKEKKEERRTKTSDIQQAALDEIATLLEE
TDIPILNISEKREETTKSEWAEQLDVSVPITDFEKRIPELAMSFPYELDTFQKQAILKLE
EGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYTSPIKALSNQKYRDLKRKFDSVGLL
TGDLQINSNASCLIITTEILQSMLYCASEVLRDLEFVIFDEVHYINNDERGHVWEESVIL
LPQTVTLVMLSATVPNPLIFADWVGRTKKKKTYVISTLKRPVPLQHYLYTGTDGKTKDNK
FLVLDESGQFFLDGWYKATSMQNPKNQNNKNVVKRLHVQRQMTPKQEQVLWNAFISHLKT
QNMLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTIRTFFQNNIRHLKGTDRELPQVLM
MQELLEGGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVVFDSITK
YDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCRTSVPHFNELKNMMCGQAQNLESK
FKVTYSMVLNLRRLNESVTVEAMMRRSFKESPVVKNQNIYKIQLQKIENELSKLPPLTDL
QKKLSDFYRVAVEYLEYLKYLKPYFYETQKKAVKNLTPGRILLISYENHYNKLALLLAIV
QCKGSQQYRVLVLKNSDVSNPSEETLSPEKCQKARKSDKWYDIVALTKKEIFVPVGIPSD
EVLTIAAWNILEITNCQIKIDCTLVLANWEKRQIPRFKNEPPSQTYQTAMQELMILSLNA
FRDSSVLKPYLEMKMNYDVDRKLYYLFDLKDAVDNVKCTEMINFEEQFEVVYKRSELESE
KNKLQLKLSDEGLSLYPEYANAVALLKDLGYIDNDERVALKGRVALQMGNNELLITELIL
KNVLTVLQPAEIAALLSTLIFQQRTDIKPSLTPELKKSCEIIKHIHTELEALEQHYQLAT
LQPLNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAATTIGDPV
LKEKMEEASTVIKRDIVFTASLYTQN
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaaagatgataaggaagagttacaatttgaactgccacctatttggcctgac
attagaactgaattaagggaatatatagaatgtttggacaatcttccaatgtatcattta
gataatgcacaatgttactggccaagaaaacttgatattttatccattttgaattgtgac
atagcaccgcttggtaccacattaaaatttgaccgtgatcctgttactggaaagcttggg
gaaatgcatgaagtacctttaaagtcagcaggtgaaactgcacgaaattctatgtctatg
actcgtgcaccaggcccacctagtgataatattagaggaaatactagtaatattcccttt
tggcctggtggttttgatgagcctgagatcgtaatggattcatcagtagaagagattgac
tttgaaaataatttaagaaccttagcaaaaggattcagcgctggtatagaattcaaaagt
gacaattgtactccaaaagagagaacaatgatcaacacagaacagatatcatcagaatca
aagataaatgaaattgaaaggatagcagacaagattaatctaatgtccataataaaggaa
gagcaagatgaatttaatttttggaagacagaaacaaaggaaaaaaaagaagaaagaaga
accaaaacttcagatattcagcaagctgcattggatgaaattgctacattgttagaagaa
acagatattcctattttaaatatctcggaaaaacgtgaagaaactaccaaatcagaatgg
gcagaacaattagatgtgtctgttccaataactgattttgaaaaacgtattcctgaatta
gcaatgagttttccatacgagttagatacttttcagaaacaagctattcttaaattggaa
gaaggatgtaatgtgtttgttgctgcacatacatcggctggaaaaacaacagtagcggaa
tatgctattgcattaagccagaaacacatgacaaaagttatttatacttctcctataaaa
gcgctttcaaaccaaaaatatcgcgatcttaaaagaaagtttgatagtgtgggactatta
acaggagatttgcaaattaattcaaatgcttcttgccttataataaccacagaaatttta
cagtctatgttatattgtgcatcagaagtattgagggatttggaatttgttatatttgac
gaagtgcattacatcaataacgacgaacgtggtcatgtttgggaagaaagtgtgatactt
ttgccacaaacagttactctagtaatgttgtctgcaactgtgcccaatcctctaatattt
gctgattgggttggtcgaacaaaaaagaaaaaaacgtatgtaataagcactttaaaacga
cctgtaccactgcaacattatttatatactggaactgacggtaaaacaaaggataacaaa
tttttagtattagacgagagtggtcaattctttttagatggatggtataaagcaacaagt
atgcaaaatccgaaaaatcaaaataataaaaatgttgttaaaagactacatgtacaacga
cagatgactccaaaacaggaacaagtattatggaatgctttcataagtcacttaaaaacc
caaaacatgttgcctgttgttgtttttatgttatcacggaagcgttgcgatatgagcgct
gtactattgagaaacgttgatcttacaactgaaactgaaaagcacactattcgaactttc
tttcaaaataatattcggcatttaaaaggcacggacagagaattgccacaagtacttatg
atgcaagaattattagaaggtgggattggtatccaccacagtggcatattacctattttg
aaagaaatagtagaaatgctattccaaactggagttgtaaaattactatttgcaacagaa
acatttgcaatgggcgtgaatatgccagcacgcactgtagtcttcgattctataacaaaa
tatgatggtactaatttccggatactttatccttctgaatacgtacaaatggctggtcga
gctggacgtagaggtcatgataccgctggaatggttatagtcatgtgtcgaacatctgtg
ccacattttaatgaattaaaaaatatgatgtgtggacaagctcagaacttagaatctaag
tttaaagtaacatattccatggttttaaatctgaggaggctaaatgaatctgtgactgtt
gaagcaatgatgcgaagatcatttaaggaatcaccagtagttaaaaatcaaaatatttat
aaaatacagttgcaaaagatagaaaatgaactatcaaaattaccacctttaacagattta
cagaaaaaactctctgacttttatcgagtagctgttgagtatctagaatatctcaaatat
ctaaaaccctatttttatgagacacaaaaaaaagcagtaaaaaatttaacacctggtagg
atattgttgatatcatatgaaaatcattataacaaattagctctgttattagcaattgtc
caatgtaaaggtagtcaacaatatagagtattagttcttaaaaattctgatgtatcaaat
ccttctgaggaaacattatccccagaaaagtgtcaaaaagctaggaaatccgacaaatgg
tacgatattgttgctttaacgaaaaaagaaatatttgtgccagttggaattccatcagat
gaagtattaactatagctgcatggaacatattggaaataacaaattgtcaaattaaaata
gattgtactttagttttggcaaattgggaaaaaagacaaataccaagatttaaaaatgaa
cctcctagtcagacatatcaaacagctatgcaagaattaatgatattatctctaaatgct
tttcgtgattcttctgttctaaaaccatatttggaaatgaaaatgaattatgatgtcgat
agaaaattatattatttattcgatttaaaggatgctgtagataatgtaaaatgtacagag
atgataaatttcgaagaacaatttgaagttgtgtataaacgaagtgaattggaaagtgaa
aaaaataaactacaactaaaacttagcgatgaaggattaagtttatatcctgaatatgca
aatgctgttgcacttcttaaagatttaggatatatagataatgacgagagagttgcatta
aaaggtcgagttgctttacaaatgggaaataacgaactattaatcactgagctcattctt
aaaaatgtgttaactgtacttcaaccagctgaaatagcagcattattatctactttaata
ttccaacaacgaactgatattaaaccaagtctaacaccagaattaaagaagagttgtgaa
ataataaagcacatacacactgaattagaagctttagaacagcattatcagttagcaaca
ttacagccactaaattttggtttagtagaagtagtttatgattgggcacaagcgaaatca
tttgccgagattatggagaaaacagatgtacaagaagggattatagtacgatgtattcaa
caattaagcgaaacattacgagatgtaaaaaatgcagccactactataggtgatcctgtt
ttaaaggaaaaaatggaagaagcctctactgtcattaaaagagatattgtttttactgca
tccttgtatactcaaaattaa
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