Frieseomelitta varia: 122537552
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Entry
122537552 CDS
T09482
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122537552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fvi03400
]
122537552
Enzymes [BR:
fvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122537552
DNA repair and recombination proteins [BR:
fvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122537552
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_IV
BRCT
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122537552
NCBI-ProteinID:
XP_043526731
LinkDB
All DBs
Position
Unknown
AA seq
902 aa
AA seq
DB search
MSRTLASEIEFKNLCDVLEKISEAHLSRKADILKRFIQKCRLMSHKLKTEFATMNVSLYP
ILRLILPDLERERDAYNLKEKSLADLYIRVFCLGKDSKDANKLKQYKIPTAKNIAGRDFA
EKAYWILQNRFPRESSNFTIERINLFLDDLSSKNKTSLSKNETFKVLFGKINALEFKWIT
RIILKNLKLGIGTKKILQVFHRDANSLFNVSSNLQHVCDTLYDPQMRYHHDIQVFSHFKP
MLLERCQIEDIEKLFNGNKEYNVQCKYDGERFQMHMKDGKYKYFTRQGYDFTNKSGFGET
SSSGFMSSVFGQLLNPQVKSVILDGELMGWHKEKKSLGSKAMSYDVKRLSNNSHYQQCFV
AFDIIMYNDNLLINEPYEKRFEILKDTFTEKEGCLLLCKSTKISKSEELCKIFNESIKNK
EEGVVVKECNSKYKPNIRDGTGCYKIKAEYSDNLVQDVDLIILGGYYGDGKFMGLIKSFL
MGVVSSSKTPDENTKKFSSVVSVSSGLSMDKLKEFDEMFKDKWQKDRPENVIPPRTEPPD
LWIRPENSIILTIKATEMIRSNDYPIGYSLRFPRVTSVRTDKPWYDACTINDLLSLIKDT
GPVQKLTKRETDYEDIEEIPKTKICKTAKQQESVKQCSTKYKEILVKPNIFDNTPVHLTR
LFEDKEICVINGNDELSKEQIENILLQHKAKVVQNPLKENYCIIVGNAKTAKANYNIQSK
KYDIVTLDWFKRVTKEENWSSLQDFLPWDLISSRESTKRRLAQYYDDYYDHYTIDANEES
LLRSFNKIEDMGRNIKFDYAEMKKADQELFNSEISPYSLFRGIVGYFNDPSDLSKIEFRF
MAGTIRETIDDSVTNVFINNNSVNPDLQNLIGNKSLQIIKSKWIGECFKHSAIISYSEYL
IQ
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaacattagctagcgaaattgaatttaaaaatttatgtgatgtattggagaaa
atctcagaagcacatctttctagaaaagctgatattttgaagcggtttattcaaaaatgt
cgtcttatgagtcacaaattaaaaacggaatttgcaactatgaatgtttcactttatcct
atattaagattaattttaccggatcttgaacgagaacgtgatgcctataatttaaaagaa
aaatctcttgctgatctttatattcgtgtattttgtttgggaaaagacagtaaggatgca
aataaactgaaacagtacaaaattcccactgcaaaaaatattgcaggacgtgattttgca
gaaaaagcttattggattttgcagaatcgttttccacgtgaaagttctaattttacaata
gaacgaatcaatttatttctcgatgatttatcgtcaaaaaacaaaactagtctgtcaaag
aatgaaacatttaaagttttgtttggaaaaattaatgcgttagaatttaaatggataaca
cgaattattttaaaaaatttgaaacttggtattggcacgaaaaagatattgcaagttttt
catcgtgatgcaaactcactgttcaatgtatcatctaatttgcaacatgtttgtgataca
ttatatgatcctcaaatgagatatcatcatgatattcaagttttttctcactttaaacct
atgttattagaacgatgccagattgaggatatagaaaagctttttaatggcaacaaagaa
tataatgtgcaatgcaaatatgatggtgaacgatttcaaatgcatatgaaagatggaaaa
tataaatattttacaagacaaggatatgattttacaaataagtctggttttggggaaact
agttcttcaggttttatgagcagtgtatttggtcagttattaaatccacaagtaaaatca
gtaattttagatggtgaattaatgggttggcataaagaaaagaaatcgttaggttcaaaa
gcaatgagctatgatgttaaaagactctcaaacaatagtcattatcagcagtgttttgtt
gcatttgatattattatgtataatgataatttacttattaatgaaccttacgagaaaaga
tttgaaattttaaaagatacatttacggaaaaagaaggttgtcttctattatgtaaatct
actaaaatttctaaaagtgaggaattatgtaagatattcaatgaaagtattaaaaataaa
gaagaaggtgttgtagtaaaggagtgtaatagtaaatataaaccaaatataagagatgga
actggttgctataaaataaaagctgaatattccgataatttggtacaagatgtagattta
attattcttggtggttattatggtgatggaaaatttatgggtttaataaaaagtttctta
atgggagtagtttcttcatcaaaaactcctgatgagaataccaaaaaattttcatctgta
gtctcagtcagcagtggtttatccatggataaattgaaagaatttgacgagatgtttaaa
gataagtggcaaaaagatcgacctgaaaatgtgattcctcctaggactgagccgccagat
ttatggattcgccctgaaaattccattattttgactataaaagcaacagaaatgatacga
agtaatgattatccaattggatacagtttacggtttcctagagttacaagtgttagaact
gataaaccgtggtatgatgcttgtacaattaacgatttattatcattaatcaaggatacg
ggaccagttcagaaattgacgaaacgagaaacagattatgaagatatagaagaaatacct
aaaactaaaatatgtaaaacagcaaaacaacaagagtctgtaaaacaatgttcaacaaag
tataaagaaatactagtgaaaccaaacatttttgacaatacgccggttcatcttactcga
ctttttgaagataaagaaatttgtgtgataaatggcaatgatgagttatctaaagaacag
attgaaaacattcttttgcaacacaaggcaaaagttgtacaaaatcctttaaaggaaaat
tactgtattattgttggtaatgctaaaacggcaaaagcaaattataatatacaaagtaaa
aagtatgatatagtaacattggattggttcaaaagagttaccaaagaagaaaattggtcg
tcattgcaagactttttaccatgggatttaataagtagtcgcgaatcaacgaaacgacga
ttagcacaatattacgacgattattacgatcactatactatagatgctaatgaagaaagt
ttattacgttcgtttaacaaaatcgaagatatggggcgaaatattaaatttgattatgca
gaaatgaaaaaagcagatcaagaattatttaatagtgaaatatctccctattccttattt
cgaggtattgtgggatacttcaatgatccatcagatttgtcaaaaattgaatttcgtttt
atggcgggaaccattagagaaactatcgatgattctgtaacgaatgtttttatcaacaat
aattccgtgaatcctgatttgcaaaacttaattggcaataaatcgttgcaaattattaaa
agcaaatggatcggggaatgcttcaaacacagtgcaattatttcttattctgagtatctg
attcaataa
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