Flammeovirga yaeyamensis: KMW28_06030
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Entry
KMW28_06030 CDS
T07356
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fya
Flammeovirga yaeyamensis
Pathway
fya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KMW28_06030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fya03019
]
KMW28_06030
Enzymes [BR:
fya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KMW28_06030
Messenger RNA biogenesis [BR:
fya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KMW28_06030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
AAA_22
DUF5321
DUF2201
Motif
Other DBs
NCBI-ProteinID:
QWG03136
LinkDB
All DBs
Position
1:1548782..1550068
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AA seq
428 aa
AA seq
DB search
MKFEKYRISESLKKSLAEKGFKRPTDIQFKSIPPILRGEDVLAIAQTGTGKTAAFAIPVM
EKLMIKPVRGKRKKTIRSLVMAPTRELAEQITEVFESLGKYTKLTTLCLYGGVPQEAQIE
KLEKGVDILVTTPGRMFDLNHQGYIKLDSVEILVLDEADHMLEKGFIKDIKDVIKLIPKH
RQTLFFSATIDEQIKKLAYSLVKNAIRIQISPKDPVSKNVNHGVVFVSMDDKRFFLERIA
KENPDAKVLVFVRTQVRAERVLKAMERVEVKAVSIHGGKDQKERFEAMKTYKNGDVKMLI
ATDVSARGIDIPNVQFVVNYDLPEEPENYVHRVGRTGRGTQKGDAIAFCSENEKELLVAI
EEFTNTKIAVHEMDKGEYAGIVGNSEETSTDWKTVMKEIAADQDSYKEAKKKANRKKEKK
KAMKAKKK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaaaatatcgtatctctgagagtctaaagaaaagtttagcagaaaaggga
ttcaaaaggccaactgatatacagtttaaatctatcccacctatcctaagaggtgaggat
gtgttggctattgcacaaacaggtaccggtaaaacggccgcatttgctattccagtgatg
gaaaagttgatgatcaaacctgtgagaggtaaaagaaagaaaaccatccgtagtttagtg
atggcgcctacaagggagttggcagaacaaattactgaggtgttcgaatctttaggaaaa
tacaccaaactaactactttgtgtctttatggtggtgtacctcaagaggcacaaattgag
aaattagaaaaaggagtggacatcttggtcacaactcccggtagaatgtttgatttgaac
caccaagggtacatcaaactggatagcgtagaaattttggtattggatgaggccgaccat
atgttagagaaaggtttcattaaggatatcaaggacgttatcaaattaataccaaaacac
agacagaccttattcttctctgccactattgatgagcaaatcaagaagttggcgtattcc
ttggtaaaaaatgccatcagaattcagatctcaccaaaagatcctgtctctaaaaacgtc
aaccatggggtggtatttgtgtctatggacgataagcgtttcttcctagaacgtatcgcc
aaagaaaatccagacgcaaaagtacttgtatttgtaagaacacaagtaagagcagaacgt
gtgctaaaagccatggaaagagtggaggtaaaggccgttagtattcatggaggtaaagac
cagaaagaacgtttcgaagccatgaaaacctacaaaaacggagacgtaaaaatgctgatc
gccacagacgtttccgcaagaggtatcgatattcctaacgttcagtttgtggtgaactac
gatttgccagaagaaccagaaaactacgtacaccgtgtaggtcgtacaggtcgtggtacc
caaaaaggagacgccattgctttctgttcagaaaacgaaaaggaattgttggtagccatc
gaagagtttaccaacactaaaattgccgttcacgaaatggacaaaggggagtacgcaggc
atcgtcggcaactcagaagaaacctcaaccgattggaaaacagtaatgaaagaaattgct
gcagatcaagattcttataaagaagcgaagaaaaaagccaatcgtaaaaaagagaaaaag
aaagcgatgaaggcgaagaaaaaataa
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