Gossypium arboreum (tree cotton): 108453267
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Entry
108453267 CDS
T05776
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108453267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108453267
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453267
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108453267
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108453267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
108453267
NCBI-ProteinID:
XP_017606764
LinkDB
All DBs
Position
10:67628712..67635246
Genome browser
AA seq
1068 aa
AA seq
DB search
MENPRRSFDRSREPGLKKPRLTEDLTPNPNIRPFSQRANPVGPASGLRSRSNDSDINYLT
RGDGGAYEPQPVSHQQQHHQQQGLVSQYKMALAELTFNSKPIITNLTIIAGENVHNAKAI
AATVCSNILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKAYKQVNPPLHQS
MRHLFGTWKGVFPVQTLQVIEKELGFTPLVNGSSSGNTTSRTDTLSQGPPQSIHVNPKYL
EKQRLQQSSRVNLAKGMVNDMAGTLANSKEESEKCFKIPGIEVRRTRGNVTDQGLDAPWF
RATSSVTETIPSQRNGFNVKHGSQNYSVSKSVNADPRLHQTLNISGRNSGGLSSSWKNSE
EEEFMWEMHSRLSEHDAANFSNNLSKDCWTPVVSEKMDFESQLHRPQSIHDAGSRFVRET
SADALSTEQKDKLSFGRQISTSWTDGLPAISSSRSESYSASLGGLPTGASSSLARIGMRP
QTSSSHLGTPGFGFLANVASGPRGTSGKQCFQSVGTASPPEQSPMRQHSPSPSFPACHSH
QQLQKLADPDYQQALSLPRADPKPSIFSGKLNVGSHRDSPQTSAPISLHPSRHYHLSQPP
LLDSVQAEPSVLSQISKVEAASALGSALECSNPLAIETSELSSTSSLLAAVMKSGILSST
SFTGNFPTKISKDVGRTSQPPLPNCPPAVFTTSGLIDPAISSDATHDAIAGAPNSSQEKI
EQLPLSPGPPPSSLVSNAPSQTFDVECKDTNSISSLLSSLVAKGLISASKKDAASLPSLL
MPNQVQKSPGVESPSESLNKSSDIQSSSDAPRSSTMDEVSYAEPAPKCSVAPHQSTSTEV
ESLIGLELRPDVIREFHSSVIGGLLDDLPHCCSLCGLRLKFQGQLDRHLEWHEMKKTALR
GSGRALRGWYARSDDWLAGKPGQLVLDSTESLNKLEKTTEMSELMVPADENQCACLLCGE
LFEDYFRLDSGEWMFKGAAYLAIPSNEGGVGTTDGSAANGPIVHANCLSESSVQDLGLSG
GIKVVKYLDLNTIYHSSELVLLYSGCFPNVCHLIITLDFLLGNGGIML
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcatttgatagatccagagaacctggtttgaaaaaaccacgg
ttaactgaagacctcactccgaaccctaatatccggcctttttctcaacgagcgaaccca
gttggtcccgcctctggtttgagatcccggtccaatgattccgacatcaattatttgacc
cgtggcgacggtggagcttacgaaccacaaccagtgtcacatcagcagcaacaccaccag
cagcaagggttagttagccagtataagatggcgttagctgagctcacttttaactcgaaa
ccaattattactaacttgacgataatcgctggcgagaatgttcataacgccaaggccatt
gctgctactgtctgctctaatattcttgaggttcccagtgatcaaaagctgccatcactc
tatcttttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgcc
agattaccggaggtgttctgcaaagcatataaacaagttaatcctcccttgcatcagagt
atgcgacatctttttggaacttggaaaggggttttccctgttcagactctccaggtgatt
gaaaaggaacttggcttcactcctttggtaaatggttcatcttcaggaaacacaacatcc
agaacagatacactatcacagggtccaccacaaagtattcatgtaaacccaaagtatcta
gaaaagcagcgtcttcaacaatcaagcagggtgaatttggcaaaaggtatggtcaatgat
atggctgggactttggccaactcaaaggaggagtctgagaagtgttttaaaattcctggc
atagaagttagaagaaccagggggaatgttactgatcaggggcttgatgcgccttggttt
agagctacaagcagtgttactgagactattcccagccagaggaatggtttcaacgttaag
catggatctcaaaattactccgtatccaaatctgtgaatgctgatcctcgtttacaccaa
actctcaatatttctggtagaaacagcggtgggttgtctagcagctggaaaaactctgag
gaggaggagtttatgtgggagatgcactctaggttgtctgaacatgatgcagccaacttc
tctaataacttgagtaaagattgttggactcctgttgtttcagaaaaaatggattttgaa
agtcagctccacagacctcaaagcattcatgatgcagggtcaaggtttgttagagagact
tctgctgatgcattatccactgagcagaaggacaaactttcttttgggcgtcagatttct
acttcatggacagatggtttgcctgctattagttcaagccgttctgagagctattctgct
agtcttggcgggttgcctaccggtgcaagttcttccctggccaggataggaatgcgacca
caaacaagttcatcccatttgggaaccccaggctttgggtttttggcaaatgtggcgtca
ggacccagaggtacttctggaaagcagtgtttccagtctgtaggaactgcatcacctcct
gaacagtctcctatgcgccagcattcaccttcaccttcatttcctgcatgccactcccat
caacagctacagaaattggctgatccagattatcagcaagctctttccctgcctcgggct
gatcccaaaccatctattttttcaggaaagttgaatgttgggtctcatagagactctcct
cagacttctgccccgatttctttgcatcctagccgtcattatcacctttcacagccaccc
ctactagactccgtgcaggctgaaccttctgttctgtctcagatctccaaagtagaagca
gcctcagcacttggaagtgcattggagtgttctaatccacttgctattgaaacttcagaa
ctttcaagtactagtagtctattagctgctgtaatgaagagtggaattctctccagcact
tcatttactggcaactttccaactaagatttctaaagatgttgggcgaacttcacagcct
cctctcccaaattgtcctcctgctgttttcacaacctcaggcttgattgatcctgcaatt
tcatcagatgcaactcatgatgcgatagcaggtgctccgaatagttcccaggaaaaaata
gaacagctgccactgtctcctggaccaccaccttcatctcttgttagtaatgccccatcg
caaacttttgatgttgaatgcaaggatacaaattcaatatctagcctcctgagctcatta
gttgcaaaaggtttgatatctgcatcaaagaaggatgctgcatctctcccatctcttctg
atgcccaaccaagtacagaagagcccaggagtcgagagtccaagtgaatcactgaacaag
agttcggacattcagagttcatctgatgctcctcgatcctccacaatggatgaggtatca
tatgctgaacctgctccaaaatgttcagttgccccacatcagtccacctcaacagaagta
gaaagcttgataggattagaactcaggccagatgtaatcagagaatttcattcatctgtg
atcggtggattgttggatgaccttccacattgttgcagcttatgtggtcttcgacttaag
tttcagggacagcttgatagacacttagagtggcatgaaatgaaaaagactgcattaaga
ggttctggtagggcattgaggggatggtatgcgaggtcagatgattggcttgctggaaag
cctgggcaattggtcttggattccactgagtctctgaacaagttggaaaagacaacagaa
atgtctgagcttatggttcctgcagatgaaaatcagtgtgcatgcttgttatgcggcgag
ctatttgaagattattttaggctggacagtggtgaatggatgtttaagggagcagcatac
ttggctatcccatcaaacgagggtggggtgggaactactgatgggagtgcagccaatggc
cccattgtgcatgcaaattgcctgtcagaaagttcagttcaggacttgggactgtctggt
ggtattaaagtggtaaagtacttggatttgaatacgatataccattcttctgagttagtt
ctgctttattcaggttgttttcccaatgtttgtcatctgatcatcactcttgacttcttg
ttaggaaatggaggaataatgctgtaa
DBGET
integrated database retrieval system
