Gossypium arboreum (tree cotton): 108453523
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Entry
108453523 CDS
T05776
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108453523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108453523
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453523
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108453523
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108453523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
108453523
NCBI-ProteinID:
XP_017607158
LinkDB
All DBs
Position
10:complement(67595781..67602449)
Genome browser
AA seq
1049 aa
AA seq
DB search
MENRRRSFDRSREPGLKKPRLTEDLTSNPNIRLFSQRANPVGPASGLRFRSNDSGTNDLT
LADGGAYEPQPVSHQQQHHQQQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAI
AATVCANILEVPSDQKLPSLYLLDSIVKNIGREYIKCFAARLPEVFCKAYRQVDPPLHQS
MRHLFGTWKGVFPLQTLQVIEKELGFTPLVNGSSSGNTTSRVDTLSQRPPQSIHVNPKYL
EKQRLQQSSRAKGMVNDMAGTLGNSKESERPDRAHSIAELSYGSVKMNTPGIEVRRTRGN
ITDQGLDAPWFGATSSVTETIPGQRNGFNVKHGSQNYSASKTVNADPRLHRTHNISGRNS
SGLSSSWKNSEEEEFLWEMHSRLSEHDAANFSNNTRKDCWTPDVSEKMDFESQLHRPQSI
HDVGSRFDRETSADALSTEQKDKPSFGHQISTAWTDGLPATSSSRSESYSASLGGLPTGA
SSSLARIGMRPQTGSSHLGTPGFVFLANVASGSTGTSGKQCLKSVGTASPPEQSPMRQHS
PSPSFPACHPHQQLQKLADPDYQQALSLPWADPKPSHFSGKLSVGSHRDSSQTSAPISLL
PSRHHHLSQPPRSDSVQAETSGQTQKPLLSQISKVEAASALGSALECSNPLAIETSELSS
TSSLLAAVMKSGILSSISFTGNLSTKISQGVGQISQPPLPNCPPAVLTTPGLIDAAISSD
ATHDAITATPNGSQEKLEQLPLPPGPPPSSLVSNGPSQTSDAESKDTNPISNLLSSLVAK
GLISASKKDAASLPSLQMPNQIQKSLEIERPSESMNKSSDIQSSSDAPGSSTMDEVSYAE
PASKCSVPPHQSTSTEVESLIGLELRPEVIREFHSSVISGLLDDLPHCCSLCGLRLKLQG
RLDRHLEWHEMTKTESRGSGRALRGWYARSDDWLAGKPGQLVFDSTGSLNKLEKKTEKAE
LMVPADENQCACLLCGELFEDYFSLDRGEWMFKGAAFLTIPSKDGGVGTADGSAANGPIV
HANCMSESSVQDLGLSGGIKVEMEENALR
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcggcgtagatcatttgatagatcaagagaacctggtttgaaaaaaccacgt
ttaactgaagacctcacttcaaaccctaatatccggcttttttctcaacgagcgaaccca
gttggtcccgcctctggtttgagattccggtccaatgactccggcaccaatgatttgacc
cttgccgacggtggagcttacgaaccacagccagtgtcacatcagcagcaacaccaccag
cagcaagagttagttagccagtataagacggcgttagctgagcttacttttaactcgaaa
ccaattattactaacttgacaataatcgctggcgagaatgttcatgccgccaaggccatt
gctgctactgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactc
tatcttttagatagtattgtaaagaatattgggagagaatacattaaatgttttgctgcc
agattaccagaggtgttttgcaaagcatatagacaagttgatccacccttacatcagagt
atgcgacatctttttggaacttggaaaggggtattccctcttcagactctccaggtgatc
gaaaaggaacttggcttcactcctttggtaaatggttcgtcttcaggaaacacaacatct
agagtggatacactatcacagcgtccaccacaaagcattcatgtaaacccaaagtatcta
gagaagcagcgtcttcaacaatcaagcagggcaaaaggtatggtcaatgatatggctggg
actttgggcaactcaaaggagtctgagaggccggatagagcacacagcatagctgaactg
tcatatggatctgttaaaatgaatactcctggcatagaagttcgaagaaccagggggaat
attactgatcaggggcttgatgcgccttggtttggagctacaagcagtgttactgagact
attcctggccagaggaatggtttcaatgttaagcatggatctcaaaattactcagcatcc
aaaactgtgaatgctgatcctcgtttacaccgaacacacaatatttctggtagaaatagc
agtgggttgtcgagcagctggaaaaactctgaggaggaggagtttttgtgggagatgcac
tctaggttgtctgaacatgatgcagccaacttctctaataacacgaggaaagattgttgg
actcctgatgtttcagaaaaaatggattttgaaagtcagctccacagacctcaaagcatt
catgacgtggggtctaggtttgatagagagacttccgctgatgcattatccactgagcag
aaggacaaaccttcttttgggcatcagatttctactgcatggacagatggtttgcctgct
actagttcaagccgttctgagagctattctgctagtcttggtggattgcctactggtgca
agttcttccctggccaggataggaatgcgacctcaaacgggctcatcccatttgggaacc
ccaggctttgtgtttttggcgaatgtggcatcaggatccacaggtacttctggaaagcag
tgtttaaagtccgtaggaactgcatcacctcctgaacagtctcctatgcgccagcattca
ccttcaccttcatttcctgcatgccatccccatcaacagctacagaaattggctgatcca
gattatcagcaagctctttccctgccttgggctgatccaaaaccatctcatttttcagga
aagttgagtgttgggtctcatagagactcttctcagacttctgctccgatttctttgctt
cctagccgtcatcatcacctttcacagccaccccgatcagactccgtgcaggctgaaact
tctggtcagactcagaagcctcttctgtctcagatctccaaagtagaagcagcctcagca
cttggaagtgcattggagtgttctaatccacttgctattgaaacttcagaactatcaagt
actagtagtctattagctgctgtaatgaagagtggaatcctctccagcatttcatttact
ggcaacctttcaactaagatttctcaaggtgttgggcaaatttcacagcctcctctccca
aattgtcctccagctgttttaacaaccccaggcttgattgatgctgcaatttcatcagat
gcaacccatgatgcaataacagctactccgaatggttcccaggaaaaactagaacagttg
ccactgcctcctggaccaccaccttcatctcttgttagtaatggcccatcgcaaacttct
gatgccgaaagcaaggatacaaatccaatatctaaccttctgagctcattagttgcaaaa
ggtttgatatctgcatcaaagaaggatgctgcatctctaccatctcttcagatgcccaac
caaatacagaagagcctggaaatcgagaggccaagtgaatcaatgaacaagagttcggac
attcagagttcgtctgatgctcctggatcctccacaatggatgaggtatcctatgctgaa
cctgcttcaaaatgttcagttcccccacatcagtccacctcaactgaagtagaaagcttg
ataggattagaactcaggccagaggtaatcagagaatttcattcatctgtgatcagtgga
ttgttggatgaccttccacattgttgcagcttatgtggtcttcgacttaagcttcaggga
cggcttgatagacacttagagtggcatgaaatgacaaagactgaatcaagaggttctggt
agggcattgaggggctggtacgcgaggtcagatgattggcttgctggaaagcctgggcaa
ttggtatttgattccactggttctctgaacaagttggaaaagaaaacagaaaaggctgag
cttatggttcctgcagatgaaaatcagtgtgcatgcttgttatgtggcgagctatttgaa
gattattttagcctggacaggggtgaatggatgtttaagggagcagcattcttgactatc
ccatcaaaggatggtggggtgggaactgctgatgggagtgcagccaatggccccattgtg
catgcaaattgcatgtcagaaagttcagttcaggacttgggactgtctggtggtattaaa
gtggaaatggaagaaaacgctctaaggtga
DBGET
integrated database retrieval system
