KEGG   Gossypium arboreum (tree cotton): 108453979
Entry
108453979         CDS       T05776                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03082  ATP-dependent chromatin remodeling
gab03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108453979
   03083 Polycomb repressive complex
    108453979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gab03036]
    108453979
Enzymes [BR:gab01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108453979
Chromosome and associated proteins [BR:gab03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108453979
   HDAC complexes
    Sin3A-HDAC complex
     108453979
    BRAF-HDAC complex
     108453979
    REST complex
     108453979
    SHIP complex
     108453979
    MiDAC complex
     108453979
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108453979
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108453979
  Chromatin remodeling factors
   NuRD complex
    108453979
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108453979
NCBI-ProteinID: XP_017607740
LinkDB
Position
11:15639751..15644824
AA seq 429 aa
MRSKEKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKDIGEREGKYYAINVPLKDGIDDTSFTRLFKI
IISKVVEMYRPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVKIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDCLLNIPNGHIENLNSKSYLSTIK
MQVLENLRSIQHAPGVQMQEVPPDFYIPDFDEDEHNPDERMDQHTQDKQIQRDDEYYDGD
NDNDHNMDM
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgttccaaggaaaaaatatcctacttttacgacggagatgtagggagcgtatacttt
ggacctaatcatccaatgaaacctcaccggctttgtatgactcaccatttggtccttgcc
tatgacctccataaaaagatggaaatttatcgtccccacaaggcttaccccgttgaactc
gctcagttccattcagctgattatgtcgagtttttgcatcgaattacgccagatacgcag
catttgttctcgaatgaattggccagatacaatcttggagaagactgccctgtgtttgaa
aacttgtttgaattttgtcaaatttatgctggtgggacaatagatgctgcaagaagatta
aacaatcagttatgtgatattgcaataaattgggctggtggtttacatcatgccaagaag
tgtgaggcatctggcttttgttacatcaatgacttggttttgggaatcttggagcttctg
aagtatcatgcccgtgttttgtatattgatatcgatgtacatcatggtgatggggttgaa
gaagccttttatttcactgacagggtgatgactgttagttttcacaagtttggcgatatg
ttctttcctggaactggtgatgtgaaggacataggagaaagagaaggaaagtattacgcc
ataaatgtcccactcaaagatggaattgatgacactagcttcactagattgtttaagata
attatttccaaggttgttgaaatgtatcgaccaggtgcaatagttcttcaatgtggagca
gattctcttgctggggatcgcttgggctgtttcaatctctcaattgatggacatgctgaa
tgtgttaaaattgtgaagaaattcaacctacctttactggttaccggaggcggaggatat
actaaagaaaatgttgcacgttgctggactgttgaaacaggagttcttttagatacagaa
cttcctaatgaaatcccagaaaatgagtatatcaaatattttgcaccagattgcttgttg
aatattccaaatgggcacatagagaatttgaatagcaagtcatatcttagtacgatcaag
atgcaagtgctggaaaaccttcgtagcatccaacatgctccaggtgtacagatgcaggag
gttccacctgatttttatattcctgattttgatgaagatgagcataatcctgatgagcgc
atggatcagcacacccaagacaagcaaatccagcgtgatgatgaatattacgatggtgac
aacgataatgatcataacatggacatgtga

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