Gossypium arboreum (tree cotton): 108454522
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Entry
108454522 CDS
T05776
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03022
Basal transcription factors
gab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108454522
09124 Replication and repair
03420 Nucleotide excision repair
108454522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108454522
03400 DNA repair and recombination proteins [BR:
gab03400
]
108454522
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108454522
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108454522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
108454522
NCBI-ProteinID:
XP_017608498
LinkDB
All DBs
Position
11:complement(78621846..78625534)
Genome browser
AA seq
413 aa
AA seq
DB search
MNNGAGRRINGGAEEDDDEDDVNGDLDAWERTYTDERSWESLQEDESGMLRPIDNQALYH
SQYRRRLRSLLSTAARIQKGLIRYLYIVIDLSRAASEMDFRPSRIAVIAKHVETFIREFF
YQNPLSQVGIVTIKDGVAHCLTDIGGSPESHINALMKKLECSGDSSLQNALDLVDGYLNQ
IPSYGHREVLILYSALSTCDPGDIMDTIQKCRKSKIRCSVIGLAAEMFICKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEFAVANLIKMGFPQRAAEGSISICSCHKEAKVGAG
YTCPRCKARACELPTECCVCGLTLVSSPHLARSYHHLFPIAPFDEVTSSHLNNPNCKLQR
NCFGCQQSLLDPGNKPGPAVVCPKCKWYFCLDCDIYIHESLHNCPGCDSLRHS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaataatggagcgggaagacggatcaatggtggagcggaagaggatgatgatgaagat
gacgtgaatggggatcttgatgcgtgggagagaacttacactgatgagaggtcatgggaa
tctttgcaagaggacgaatcggggatgcttcgccccattgacaaccaggccctttatcat
tcacagtatcgccggcgccttcgttcccttttgtccactgctgctcggatacaaaagggt
ctcattcgttatctatacattgttatcgatctttctcgggcagcttcagagatggatttc
cgaccaagtcgaattgctgtcattgcaaaacatgttgagactttcatccgggagttcttt
taccagaatcctcttagtcaagttggtattgtgactataaaagatggggttgctcactgc
ttaacagatattggtggtagtcccgagtctcatatcaacgctttgatgaagaagttggaa
tgttcaggtgattcctccttacagaatgcattggatcttgtagatgggtatctgaatcaa
attccatcatatggtcatcgtgaagttctcatattatattctgctctcagtacttgtgat
cctggagatataatggacaccattcagaaatgtaggaaatctaaaataagatgttcagtt
attggcctcgctgcagaaatgtttatatgcaaacatctttgccaggaaacaggaggaacg
tactctgttgcactggatgagtcccactttaaagagctaatattggaacatgcaccacca
ccacctgccatagcggaatttgcagttgctaatttgatcaagatgggattcccacaaaga
gcagctgagggttctatatcgatttgttcgtgtcataaagaagctaaggtaggtgcaggt
tacacttgtccaagatgcaaagcccgtgcatgtgagcttcctactgaatgctgtgtctgc
gggttgacactcgtgtcttcaccccatttggctagatcatatcatcatctctttccaata
gcaccatttgacgaggtgacctcatctcatttaaacaatccaaactgcaaactgcaaaga
aattgtttcgggtgccaacaaagcctccttgatccaggaaacaaacccgggcctgccgtt
gtgtgcccgaagtgcaaatggtacttctgcctggattgtgacatttacattcatgagagt
ttgcacaattgtcccggttgtgacagcttgaggcattcctag
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