Gossypium arboreum (tree cotton): 108456924
Help
Entry
108456924 CDS
T05776
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108456924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108456924
Enzymes [BR:
gab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108456924
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108456924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
108456924
NCBI-ProteinID:
XP_017611157
LinkDB
All DBs
Position
1:complement(126796633..126808227)
Genome browser
AA seq
1182 aa
AA seq
DB search
MTEEIKLSVLVSLFTWIQRSRPSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAICLIDALGLSRDSADALRLINWRKGGANTGANAGNFALVAAEILQRRQGTV
SGGLTIKELNELLDRLASAESRAEKTAIFATLINKTNAQEMKWVIMIILKDLKLGITEKS
IFQEFHPDAEDLFNVTCDLKLVCEKLRDPTQRHKRQDIEVGKAVRPQLALRVRDPAAAWK
KLHGKEVVVECKFDGDRIQIHKNGTDIHYYSRNFLDHSEYQHGMSNIITQNILVDRCILD
GEMLVWDSTLNQFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
EILQKVVKPLKGRLEILVPNGGLNANRPPGEPCWSCIAHSVNDVERFFKETIENRDEGIV
IKDLNSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFISFCRVGTGLTDDDLETVAKKLKPYFRKYEYPKKMQPSFYQVTNHSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKGTEQENQPDSKTKHKAHARKADRKNVSIVPSHFIRTDTSCVKGETLIFSNLM
FYFVNVPPTYSLDSFHKMVVEHGGRFSMNLNNSVTHCVAAESKGIKYQAAKLHGDIIHYS
WALDCCSQKKLIPLQPKYFLFLSESSKTKLQQEVDQYFDPYYWDLDLADIKQLLNNIQRS
ENSKTIDYYRAKYCPNDKWSLFHGCSVYFYSSAESLKADWQVLLNLALRRLKLEILMGGG
KISENLSHATHLVVLSVPGLDVDFDSLIKSCSFEEKNLVWKKGLHVVKSQWLENCIERGQ
KLREDQYSLKPNDFEETNFVESKLDQNLEKSKPDFNGVQNKGTSTSPESKTKQRGGKDHP
EKSISAVTPSHGNRKRRPASKNTKKGKTIVTRAQRVPRRRGKMSVKIDEDGSEESGSDDK
TNEEIGKGEGNNTECYRMAGRENFEFHQNQAAEENAGINWPNKAHDTVMCEANNDQPGNK
AEKFDHMELDEGKYGHEISNSEKLEVMVDPVQAMLLDMIPSLGIKHVETTNSVVQNEKPH
MDNDADIRVVEDEKLDADFIPQPQKKKKVSYKDVAGELLKDW
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagaaataaagttaagcgttttagtgagtttattcacatggatccagaggagc
cgaccgtcggcgaagaagcggtctaagtttcgtaaattcctcgacaccttttgtaaacca
tccgattacttcagtgctatgcggcttatccttccttcactcgatcgagaacgtggaact
tacggcctcaaggagtctgttctcgcaatttgcctcatcgatgctctcggcttgtcgagg
gattctgctgatgctctacgtcttatcaattggcgcaaaggtggagctaatactggtgct
aatgctgggaactttgctcttgttgctgctgagattttgcagcgtaggcaaggtacggtt
tccgggggacttactatcaaggagttgaatgagttgcttgatcgattggcttctgctgaa
agcagggctgagaagactgcaatctttgctactttgattaataagacaaatgcacaggaa
atgaagtgggttatcatgattattctaaaagatctcaagttgggaattactgagaagagc
atatttcaagaatttcatccagatgcggaagacttgtttaatgtcacgtgtgacctaaaa
ttggtttgtgaaaagttaagggatcctactcagcgtcataagcgtcaggacattgaggtt
ggaaaggctgtacgcccacaactagctttgagagttcgtgatccagctgctgcatggaaa
aagcttcatggtaaggaggtagttgttgagtgtaaatttgatggcgatcgcatccaaatc
cacaaaaatggaacagacatacactactactccaggaattttcttgatcattctgaatat
cagcatgggatgtcaaatattattacccaaaatattttggttgataggtgtatacttgat
ggagaaatgttagtttgggattccacgttaaatcagtttgctgagttcgggtcaaatcag
gaaatagccaaagcagcaaaagatggccttgatagtgacagacagttatgttatgttgca
tttgacattctttatgttggggatacaagtgttattcaccaaagtttgaaggaacggcat
gagattcttcaaaaagttgtgaagcctttgaagggtcgcttagagattttagtgcctaat
ggtggtctcaatgcaaatcgtcctcctggggaaccttgttggtcatgtattgctcacagt
gtgaatgatgttgagagatttttcaaggaaacaattgaaaatagggatgaaggaattgta
ataaaagaccttaattccaagtgggaaccaagtgatagaagtgggaagtggttgaagttg
aagcctgattacattcgggctggttctgacttggatgttctcattattggagggtattac
ggctctgggcgtcgaggaggagaggtagctcaattcttagtaggcctagcagatcgtcca
gaccccaatgcttaccccaggcgatttatatccttctgcagggttggtactgggttgact
gacgatgacttggaaactgttgcaaagaaattgaagccttattttaggaaatatgaatat
ccgaagaagatgcaaccaagtttttatcaagttacaaatcactcgaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcatcctttctatcaccagtgatatcaggact
ataaggtctgaggtatttgctgcaccgtacagcctgagatttccacgtattgatagagtg
agatatgacaagccttggcatgagtgccttgatgtgcaatcatttgtagaactggtgcat
tcaagtaatggtaccactcaaaaagggacagaacaggaaaaccagcctgatagtaaaaca
aagcacaaggcacatgctagaaaggcagacagaaagaatgtctccattgttccttctcat
tttattcggactgacacgtcctgcgtaaagggagaaaccttaatattttcaaatcttatg
ttttactttgttaatgtgcctccgacatattctcttgattcatttcacaaaatggttgtg
gagcatgggggaaggttctcaatgaatttgaacaattcagttactcattgtgttgcagct
gaaagcaaagggatcaagtatcaggcagcaaagctgcatggggacattatccattactct
tgggccttggattgttgctcacaaaagaagctcattcctttgcagccaaagtatttcctt
tttctttctgaatcatcaaagacgaaattacagcaagaagttgatcaatactttgaccct
tactattgggaccttgaccttgcggatatcaaacagcttttaaacaatatccaaagatct
gaaaactccaagacaattgactattacagagcgaagtactgtccaaatgataaatggtcc
ctgtttcatggctgctctgtttacttctactcttcagctgagtctctgaaagctgattgg
caagtcttgttgaatctagcactgaggaggttaaagcttgaaattttaatgggtggcggc
aaaataagtgagaatctcagccatgctacccatttggtagtcctctcagtaccgggattg
gatgtggactttgactctcttattaagagttgttcttttgaagagaaaaatcttgtgtgg
aaaaaggggcttcatgttgtcaaatctcagtggttggaaaattgcatagagcggggacag
aagttgcgagaagaccaatatagcttgaaacccaatgatttcgaagaaacaaacttcgta
gaaagcaaattggaccaaaatctggaaaaatccaagccagatttcaacggtgttcagaac
aagggtacatctacttcacccgaaagtaaaacaaaacagagaggaggcaaagatcacccc
gaaaaatcaatttcagcggttacacctagtcacgggaacaggaagagaagacctgctagc
aagaacacaaagaaaggaaaaacaattgtaacccgagctcaaagagtaccaagacgtcgt
ggaaagatgtctgttaagattgatgaagatgggtctgaagaaagtggttctgatgacaaa
acaaatgaggagatagggaagggtgaagggaataatactgagtgctacagaatggctggt
agggaaaatttcgagtttcatcaaaatcaagcagcagaagaaaatgccggcataaactgg
cctaataaagctcatgataccgtgatgtgtgaagcaaataatgaccaacccggcaacaaa
gccgagaagttcgaccatatggaactagatgaagggaaatacggccatgagatttcaaac
tcagaaaagctagaagttatggtcgatccggttcaggccatgttactagacatgatccca
agccttggaataaagcatgtcgaaaccacaaattctgttgtccaaaacgagaaacctcac
atggataacgatgcagacattcgtgtcgtagaggatgagaaactagatgccgattttatt
ccacagccacaaaagaaaaagaaagtgagttacaaggatgttgccggtgaactactcaag
gattggtaa
DBGET
integrated database retrieval system
