Gossypium arboreum (tree cotton): 108460535
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Entry
108460535 CDS
T05776
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108460535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108460535
03041 Spliceosome [BR:
gab03041
]
108460535
03036 Chromosome and associated proteins [BR:
gab03036
]
108460535
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108460535
Spliceosome [BR:
gab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108460535
Complex B
108460535
Complex C
U2 SnRNP specific factors
108460535
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108460535
TFTC complex
108460535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
108460535
NCBI-ProteinID:
XP_017615539
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All DBs
Position
12:9437672..9442557
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSGGKVQEIVVARGKILSLLRPDDLGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FASIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHLDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNEGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVSDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVKASVGGEDGADHPANLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVKVRGRPAILCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVMQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNVNEMENGGDDEDR
EDPLSDEQYGYPKAESNKWVSCIRILDPRTATTTCLLELQDSEAAFSVCTVNFHDKEYGA
LLAVGTAKGLQFWPKNSLVAGFIHIYRFLEDGRSLQLLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKKRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLY
TFADDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHIGDVVTCLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEIRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaacttaactcttcaacaagccaccggcatcgtctccgccataaacgga
aacttctctggcggcaaagtccaagaaatcgtcgtcgctcgtggcaagatcctttccctt
ctccgtcccgacgatctcggtaagctccaaacacttcactctgtcgaaatctttggctgc
atacgttctttagctcaattccggctaaccggcgcccaaaaggactatattgtagtaggg
tcggattctggtcggatcgttatccttgaatacaataaagaaaagaacgtttttgataaa
gttcaccaagaaacttttgggaaatctggatgtcgccggattgtcccgggtcagtactta
gctattgaccccaaaggaagagctgtaatgattggtgcttgtgagaaacagaaattagtt
tatgttttaaatagagatactgccgctaggttaaccatttcgtcgcctttagaagctcat
aagtcacatactattgtttattcaatttgtggtgttgattgtggcttcgataaccctatt
tttgcttccattgaattggattactcggaggctgatcaggattccacgggacaggctgct
aatgaggcgcagaagcatttgacgttttatgaactcgatttagggcttaaccatgtgtct
aggaagtggtcagaacaagttgataatggggcaaatatgttggtcacggtacctggtggt
ggtgatgggccgagtggggttttggtttgtgcagaaaacttcgttatttataagaaccag
gggcatctggatgttagggccgtcattcctagacgggctgacttgccggcagaacgtggt
gttttgattgtttctgctgctactcataagcagaaatctatgttcttcttccttttgcag
acagaatatggggacatttttaaggttacactggaacatggaaatgaaggagttacagaa
ttaaagattaaatattttgatacaattcctgttacagcatcaatgtgtgtgttgaagact
ggtttcctatttgcagcttcggagtttggaaatcatgctttatatcagtttcaggctatt
ggagatgaccctgatgttgagtcatcgtcatctactttgatggaaactgaagaaggtttc
cagccagtgtttttccagcctagagggcttaagaatctagttagaattgaccaagctgag
agcctgatgccaataatggatatgaaaattgctaatctctttgaggaagaaacacctcag
atattttcactctgtgggcgtggtcctcgttcgtctttgaggatattaaggcccggtttg
gccatcagtgagatggctgtctcacagcttcctggtgtcccgagtgctgtgtggacggtg
aaaaagaatgttagtgatgcctttgatgcgtacattgtagtgtcatttgccaatgctact
cttgttctttccattggtgaaacagttgaagaagttagtgatagtggttttcttgatacc
actccttctcttgctgtttccttgattggtgatgattcactaatgcaagtccaccctaat
ggtatcaggcatataagggaagatgggcgtattaatgagtggagaactcctgggaaaagg
acgattgttaaggttggctcaaatgggcttcaagtggttattgcattgagtggaggggag
cttatatactttgaggtggatatgactgggcaattaatggaagtggagaagcatgaaatg
tctggagatgtggcttgtcttgacattgcccctgttcctgaaggaagacagagatcccgt
tttcttgcagtgggttcatatgataatacaattcgtatattgtctttggatcctgatgat
tgtatgcagattctgagtgttcagagtgtgtcctcgcctcctgagtctctccttttcctt
gaagttaaggcatcagttggtggggaggatggtgctgatcaccctgccaatcttttcctt
aatgctggtttgcagaatggagtgttgttccgaacggtagtagatatggttacagggcag
ctctctgactcccgttcacggttcttagggctgagagccccaaagttgttctctgttaaa
gtgagaggccgacctgcaattctttgcttgtccagtcggccatggcttggttatattcat
caaggacattttctgctaactccgctttcttatgagacactcgaatttgctgcctcattt
tcatctgatcagtgtgctgaaggtgttgttgctgttgctggggatgcattgagggttttc
accattgagcgtcttggagaaacctttaatgagactgctattcctttgaggtatactcct
aggaggtttgtcatgcaaccaaagaggaaattattggtaattatcgagagcgaccaagga
tcatatactgcagaagagcgtgaagctgcgagaaaggagtgctttgaggctgctggaatg
ggtgaaaatggtaatggtaatgtgaatgaaatggaaaatggtggtgatgacgaggacaga
gaggatcccctctctgatgagcagtatggttatccaaaggcagagtcgaacaagtgggtt
tcttgcattagaattcttgatccgaggactgctaccacaacttgccttctggagcttcag
gatagtgaagctgctttcagtgtatgcaccgtgaatttccatgataaagagtatggagct
ctcttggctgttggaactgccaagggcctgcagttttggcccaaaaacagcttagttgcg
ggatttattcatatttataggtttcttgaagatggcaggtcacttcaacttttgcacaag
acacaagtggaaggtgttcctcttgctttatgccagtttcagggaaggttacttgctgga
ataggatctgtgctccgattgtatgacttggggaaaaagagattgcttagaaagtgtgaa
aataagcttttccctaacactattgtctctatccacacttaccgtgatcgaatatatgtt
ggggacatccaagagtcattccatttttgcaagtacagaagggatgaaaatcaactgtat
acttttgctgatgatgttgttccaagatggcttactgcatcataccatatagatttcgac
accatggctggtgcagacaagtttgggaatgtctattttgtgcgcctaccacaagatgta
tcagatgagatagaagaagacccaaccggtggaaagataaaatgggaacagggaaggctc
aatggagctcctaacaaggtagaggagattgttcagttccatattggagatgtggtaact
tgcttgcagaaggcatctctgataccaggtggtggagagtgtgttctttatggtacagta
atggggagcttgggggcattgcttccattcacttcccgtgatgatgttgacttcttttct
cacctagagatgcatatgagacaggagcacccgcccttgtgtggacgagatcatatggct
tatagatctgcatatttccctgtcaaggacgttattgatggggatttgtgtgagcagttt
cctaccctacctttggatttgcagagaaaaattgcagacgagttggatcggactccaggg
gagatattgaagaaacttgaagaaatccgaaacaagattatctga
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