Gossypium arboreum (tree cotton): 108460706
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Entry
108460706 CDS
T05776
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108460706
09122 Translation
03013 Nucleocytoplasmic transport
108460706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460706
03041 Spliceosome [BR:
gab03041
]
108460706
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108460706
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108460706
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108460706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
CENP-X
Motif
Other DBs
NCBI-GeneID:
108460706
NCBI-ProteinID:
XP_017615792
UniProt:
A0A0B0MSX7
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Position
12:complement(66918434..66929526)
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AA seq
611 aa
AA seq
DB search
MMEAFRKAILQAGPPETFALKTVQEVIKPQKQTKLAQDENQLLENMLRTLLQELVSSAVQ
SGEEIMLYGKSIDDVDEMQGVIPRLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCK
DIFRYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLS
ERSAVNIKGVFNTSNETKYEKDPPEGISVDFNFYRTFWSLQEYFCNPASLSNAPIKWQKF
TASLMVVLNTFDAQPLSEEEGAENNLEEEATTFNIKYLTSSKLMGLELKDPSFRRHILLQ
CLILFDYLKAPGKNDKDSSESMKEEINSCEDRVKKLLEVTPPKGKDFLHSIEHILDREKN
WVWWKRDGCQPFEKQPIEKKTVHDGAKKRRTRWRLGNKELSQLWKWADQNPNALTDSQRV
RTPTISDYWKPLAEDMDDSAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSKFTEHGIEG
VVPLELLPPEVRSKFQGKPSDRSKRAKKEEMRSTSHQVEESQIATPASEIEGEGIRADAE
ASVAVMDTDVSAATGNNSQGGTPTPEPDEHQKQSPDTDVGQEAGQLEADAEVETGMIDGE
TDPEAESDHVG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagcattcaggaaagccatattgcaggctggcccgccggaaacttttgcactt
aagacggttcaagaggttataaagcctcagaaacaaacaaagttagctcaagatgaaaac
caattattggagaacatgcttcggaccttgcttcaggaattggtgtcatctgcagtacag
tctggggaggagataatgctgtatgggaagtcaattgatgatgttgatgaaatgcagggt
gtaattccacgacttctagatgttgtgctctatctttgtgagaaagaacatgttgaaggt
ggtatgatattccagcttctagaggacttgacagaaatgtctacaatgagaaattgcaaa
gacatttttcgttatatagaaagtaagcaggacatcctggggaagcaagagctttttgct
cgtggaaaacttgtcatgttgagaacatgcaatcaacttcttcgtcgactgtccaaggca
aatgatgtggtattttgtgggcgaatcctaatgtttctggctcatttctttccattatct
gaacgttcagctgtgaatataaagggagtttttaacacatcaaatgagacaaaatatgag
aaagacccacctgaaggcatttctgttgatttcaacttctatagaaccttctggagttta
caggaatacttttgcaaccctgcttccctttcaaatgctcctataaagtggcagaaattt
acagctagtttaatggttgtgttgaatacatttgatgcacagcctttgagtgaggaagag
ggagctgagaacaatttggaggaagaggcaaccactttcaacatcaaatatcttacaagc
agtaaattgatgggcttagagttaaaagatccaagtttcaggcgccacattcttttgcag
tgcctcatactatttgattatcttaaggccccaggaaagaatgataaagattcatctgaa
agcatgaaagaagaaattaattcttgtgaagatcgagtgaagaaactactcgaagtgact
cctccgaaggggaaagattttcttcatagtattgagcatatattagatcgtgaaaagaat
tgggtctggtggaaacgtgatggctgtcaaccatttgaaaagcagccaatagagaaaaaa
acagttcatgatggagctaagaaacgtcggacaaggtggagattggggaataaagaactc
tctcagttgtggaagtgggcagatcagaatccgaatgctttgacagactctcaacgtgtt
cgaactcctacaatctcagattactggaaacccttggctgaagatatggatgattctgca
ggaatagaagctgaatatcaccacaaaaataacagggtttattgctggaagggccttcgt
ttttctgctaggcaagacttagaagggttctcaaaatttaccgaacacggtattgaagga
gttgttccattggaacttctcccccctgaagtgcgatcaaagttccaaggtaaacctagt
gacaggtcgaaacgtgccaaaaaggaggagatgaggagtacttcacatcaggttgaggaa
agtcagattgcaacaccggcaagtgagattgagggagaaggaatcagagctgatgcggag
gcctctgtagcagtgatggatacggatgtctcagctgcaacaggaaataattcccaaggg
ggcaccccaaccccagaaccagatgaacatcaaaagcaaagccctgatacagatgttgga
caagaagctgggcaattagaagcagatgctgaagtggagactgggatgatagacggtgag
acagatccagaagctgaatctgatcatgtaggatga
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