Gossypium arboreum (tree cotton): 108465218
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Entry
108465218 CDS
T05776
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108465218
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108465218
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
108465218
NCBI-ProteinID:
XP_017621030
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All DBs
Position
Unknown
AA seq
412 aa
AA seq
DB search
MAFQFNFVSSMLILLLLSISSAKGQGGGGGGVIDVVAKFGAKADEKTDLSKPLLDAWKEA
CASTSPAKIVIPKGIYFLSTATLDGPCKAPIELQVEGTVKAPADPGAFKEPKWIAFNRIE
NFKLFGGGVFDGQGTTAYKREGCEKHDYCDSLPINLRFDFLTNTMVQGITSKDSKQFHVN
VLGCKNITFEHFTVSAPGESPNTDGIHIGRSDGVNVLNTDIKTGDDCVSIGDGSKNLVIN
GVTCGPGHGISIGSLGLFKNEEPVDGVIVKNCTLTNTSNGVRIKSWPGAEPGSCSNIHFE
DITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGTSALPEAVKIICSATLP
CENVELADIEIMLSGPAGPAVSQCSNVKPKVSGKQNPVACSAPIGAKPTLAA
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcttttcaatttaattttgtttcatccatgttaatactattacttttatccatatca
tctgctaaaggtcaaggaggaggaggtggtggtgttattgatgttgttgcaaaatttggt
gcaaaggcagacgagaaaacagatttgagtaagccattgttggatgcttggaaagaagca
tgtgcctcgacatctccagcaaaaattgtgattcctaaaggtatatattttttaagtaca
gctaccttagatggtccttgcaaggctcctattgagcttcaagttgaaggcactgtgaag
gctccggcagaccctggtgctttcaaggagcctaaatggattgccttcaatagaattgaa
aatttcaaattgtttggtggaggagttttcgacggccagggaaccactgcttataaaagg
gaaggttgcgaaaagcatgattattgtgattcacttcctattaatctaaggtttgatttt
ttaaccaacacaatggtacaaggtataactagcaaagatagtaagcagttccacgttaat
gttctaggatgcaaaaacattacttttgaacatttcaccgtatctgcacctggagaaagc
ccaaacacagatgggattcacatcgggagatcagatggggttaatgttcttaacacggac
ataaaaactggtgatgattgtgtttcaattggggatggttccaaaaatttggttatcaat
ggagtaacttgtggaccaggacatggtatcagtattggcagtctcggattgtttaaaaat
gaagaacccgttgatggagttatagtaaaaaactgcaccttgactaatacttcaaatggt
gttagaatcaaaagttggccaggtgctgaacccggctcttgttcgaacattcactttgag
gatattactgtgaccaatgtcagttctcctattataattgatcagaaatattgcccatgg
aacaaatgcaaaataaatgaagaatcaaaagttaaactaagcaacattagtttcaaaaac
attcacggcacttctgcgctaccagaagctgtcaagattatttgcagcgctactttgccg
tgtgaaaatgtggaacttgccgacattgaaattatgctcagtggaccggctggacctgca
gtatcacaatgttcaaatgtgaagcctaaagttagtggcaaacaaaatccagttgcatgt
tccgcccctatcggagcaaaacctaccctggctgcttaa
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