Gossypium arboreum (tree cotton): 108483405 Help Entry 108483405         CDS       T05776                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism gab  Gossypium arboreum (tree cotton) Pathway gab03030   DNA replication gab03410   Base excision repair gab03420   Nucleotide excision repair gab03430   Mismatch repair Brite KEGG Orthology (KO) [BR:gab00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     108483405    03410 Base excision repair     108483405    03420 Nucleotide excision repair     108483405    03430 Mismatch repair     108483405  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:gab03032]     108483405    03400 DNA repair and recombination proteins [BR:gab03400]     108483405 Enzymes [BR:gab01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      108483405     6.5.1.6  DNA ligase (ATP or NAD+)      108483405     6.5.1.7  DNA ligase (ATP, ADP or GTP)      108483405 DNA replication proteins [BR:gab03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     108483405  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      108483405 DNA repair and recombination proteins [BR:gab03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      108483405    NER (nucleotide excision repair)     Other NER factors      108483405    MMR (mismatch excision repair)     Other MMR factors      108483405 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  108483405 NCBI-ProteinID:  XP_017642271 LinkDB All DBs Position 7:78673598..78682807 Genome browser AA seq 799 aa AA seqDB search MLTFRPSHLLRYTCCITRPLTPLLPPFSSHILPSNSPFFRPKPLSLSSLNPHSNMSTRPS AFDALMSNARRLAGKKSSSSSSPTKKRKSPDSSPTQNPNPPKTVGSTEVKHDPEVSSDGI GKPINDSPKPDLDEAKKTPDSKKVKVGSTSERNAEMKGKIGLLKKKPADFDPNMVACWEK GERVPFLFLSLAFDLISNETGRIVITDIVCNMFRTVIATTPDDLVATVYLAANKVAPAHE GLELGIGDASIIKALAEACGRTESQVKSQYKDKGDLGLVAQASRSSQSMMRKPDPLTVIK VFDTFQLIAKESGKDSQEKKKNRIKSLLVAATDCEPQYLIRLLQTKLRIGFSEQTLLAAL GQAAVYNEQHSKPPPNVQSPLEEAAKIVKQVFSILPVYDKIVPALLTGGVWDLPKSCGFT PGVPVGPMLAKPTKGVAEIINKFQDIDFICEYKYDGERAQIHYMENGSVEIYSRNAECNT GKFPDVVAAISRFKKSSVKSFVLDCELVAYDRVQKKILPFQILSTRARKNVVVSEIKVDV CIFAFDILYLDGQPLLHEQLKVRKERLYDSFEEEPGFFQFATALTSNDLEEIQIFLNSAV SSSCEGLIIKTLDRDATYEPSKRSLNWLKLKKDYMESIGDTLDLVPIAAFHGRGKRTGFY GAFLLACYDENNEEFQSICKIGTGFSEAELEERSASLRSKVIPEPKSYYRCSEMMKPDVW FETSEVWEVKAADLTISPVHRAAIGIVDPDKGISLRFPRLVRVREDKTPEQASSSEQVAE MYNAQKHNQTNNEDDGEDD NT seq 2400 nt NT seq  +upstreamnt  +downstreamnt atgctaacgtttcgcccatcccatcttctccgctatacttgttgtattactcgtcctctc acccctctccttcctcccttttcctcccatatccttccttccaactcgcctttctttcgc cccaaacccctctctctttcttccttaaaccctcactccaacatgtccactcgcccctcc gccttcgatgctttaatgtctaatgctcgccgtttagccggtaagaagagctcttcctct tcttcgcccaccaagaaacgcaaatcccccgattcgtcgcccacccaaaaccctaatccc cccaaaaccgtcggctccactgaagtcaagcacgacccagaggtttctagtgatggaatc ggaaagcccattaacgattccccaaaacccgatttagatgaggcgaagaaaaccccggat tcgaagaaggtgaaggtggggagcacctccgagagaaacgcggagatgaaagggaaaatt ggtttgttgaagaagaagccggcggattttgatcccaatatggtggcgtgttgggagaaa ggagagagggtgccgtttttgtttctgagcctggcgtttgatttgatatccaatgagacg ggtcggattgtgataacggatattgtttgcaatatgtttaggactgttattgctaccacg ccggatgatttggtggcgacggtttacttggcagcaaataaggttgctccggcgcacgag gggttagagctgggaatcggtgatgcatccattatcaaggccctagctgaggcctgtggg aggactgaatcacaggttaagagtcagtacaaggataaaggggacctgggccttgttgca caggctagccgttcatctcaatcaatgatgcgcaagcctgatccattgactgttatcaaa gtgtttgacacgtttcagctaattgctaaggaatctggaaaggatagtcaggagaagaaa aagaatcgtatcaaatcacttcttgttgctgcaactgactgtgaacctcagtatttgatt cgtctgcttcagacaaagctgcggattggattttcagagcagactctgttagctgcatta ggacaggctgctgtatataatgaacaacattctaaaccacctccaaatgttcagtctcct ttagaggaggctgctaagattgtcaaacaagttttttctatccttccagtctatgataaa atagtcccagcactcttgactggtggtgtatgggatctgcctaagagttgtggctttacg ccgggtgttcccgttggacctatgctagcaaaaccaaccaaaggtgttgctgaaatcata aataaattccaggacattgacttcatatgtgaatataaatatgatggagagcgtgcgcag atacactatatggagaatggttcagttgagatatacagccgaaatgctgagtgtaacact ggaaagtttcctgatgttgttgctgcaatttctagatttaagaagtcctctgtaaaatca tttgttttggattgtgagcttgttgcttatgatcgtgttcaaaagaaaatattacccttt cagatccttagtacaagagcacggaaaaatgtggtagtgagtgaaataaaagttgatgtg tgcatattcgcttttgacatcttataccttgacgggcaaccacttcttcatgagcaactg aaagttcgtaaggagaggctttatgattcatttgaggaagaacctgggttttttcaattt gcaacagccttaacatcaaatgatcttgaggagattcaaatattccttaattctgctgtt tcttcaagttgtgagggtttaattatcaaaacattggatagagatgctacatatgagcca tcgaagcggtcactcaactggctaaaattgaagaaagactacatggaaagtattggcgac acattagatctagtacctattgctgctttccatggccgtgggaaacgaactggcttctat ggtgcttttctcttggcatgttatgatgaaaataatgaagaattccagagtatctgtaaa ataggtactggattttctgaagcagagcttgaggaacgttctgccagtctccgctctaaa gtgattcctgaaccaaagtcatactatcgttgttctgagatgatgaagccggatgtatgg tttgagacttcagaggtttgggaggtaaaagctgctgacttgaccattagccctgttcat cgtgctgctattgggattgtggatcctgataagggcatatctctccgatttccacgttta gttcgtgttcgagaagataagacaccagagcaagcttcatcatctgagcaggttgctgag atgtataatgctcaaaaacacaatcaaaccaataacgaagatgatggtgaggatgattga

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