Gossypium arboreum (tree cotton): 108483665
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Entry
108483665 CDS
T05776
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108483665
09123 Folding, sorting and degradation
03018 RNA degradation
108483665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108483665
03041 Spliceosome [BR:
gab03041
]
108483665
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108483665
mRNA cycle factors
Stress granule specific factors
108483665
Spliceosome [BR:
gab03041
]
Complex C
Other components
Complex C specific factors
108483665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_3
Nup35_RRM
RRM_7
DUF5062
Motif
Other DBs
NCBI-GeneID:
108483665
NCBI-ProteinID:
XP_017642670
LinkDB
All DBs
Position
7:127601783..127606154
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AA seq
653 aa
AA seq
DB search
MAEVQVQAEVAPVAATSSPPPQQQQVVNGVASNNGGSVTTSLYVGDLDLSVTESHLYDLF
SPLGTVVSLRVCKDSRTRRSLGYGYVNYSNTHEAARALEVLNFTLLNGKPIRIMYSNRDP
TVRRTGAGNIFIKNLDKTIDNKALHDTFSTFGNILSCKIATDNTGQSKGYGFVQFDNEES
AKNAIDKLNGMLLNDKQVFVGPFLRKQERESSIGKAKFNNVYVKNLSESTTDEDLKNAFS
EHGPITSAVIMRDADGKSKCFGFVNFENPDDAARSVDSLNGKKFDDKEWFVGKAQKKSER
EMELKGQYEQTLKETADKFAGLNLYVKNLDDSINDDKLRELFSEFGTVTSCKVMLDPNGV
SRGSGFVAFSTAEEASQALMEMNGKMVVSKPLYVAVAQRKEERRARLQEQFSQMRPGAMG
PTVGPQVPMYPPGAAHFGQQLFYGQGPPAMIPPQPGFGYQQQLVPGMMPNFFMPMLQPGQ
QNQRQGGRRSGAGPMQQTHQPLPFMQPQMIPKGRGYRYPPGRNMPDVPGRVLPVPYNVGG
MPFRDAAFSQPMATGALASALANATPVQQRTLLGENLYPLVGQLEHDNASKVTGMLLEMD
QTEVLHLLESPEALKAKVAEAMEVLRNIGPKPQQANSATDRLASLSLNENLVS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggttcaagtgcaagctgaggtggctccggtggctgcgacgtcgtcgccgccg
ccacagcagcagcaggttgtgaacggggtggcgagtaataatggtggtagtgtgactacg
tcgttgtatgtcggggatcttgatctgagtgtaacggaatctcatctttacgatttgttt
agcccactgggaacggtagtttcgcttagggtttgcaaagactcgaggacccgccgctct
cttggttatggttacgttaattacagcaacacacatgaagctgcacgggcgttggaggta
ctgaatttcactcttctcaatggcaagccaattaggataatgtattctaacagggatcct
actgtccgaagaactggggcaggaaatatttttatcaagaatttggacaagacaattgac
aataaagctctgcatgacacgttctctacgtttgggaatattctatcttgcaagatagcc
actgataatactggccagtcaaaaggatatggctttgtgcaatttgataatgaggagtcc
gccaaaaatgcaattgataagctcaatggtatgctacttaatgacaaacaagtttttgtt
gggcctttccttcgtaaacaagaaagagagtcatccataggcaaggcaaagtttaacaac
gtctatgtaaagaatctatcagagtcaacaactgatgaggatttaaagaatgcatttagt
gaacatggacctataactagtgctgtcattatgagagatgcggatggaaagtcaaagtgt
tttggatttgtcaactttgagaatcctgatgatgcagctcgttctgttgattctctcaat
ggaaagaagtttgatgataaagaatggtttgttgggaaggctcagaagaaatctgaaaga
gagatggaactgaaagggcagtatgagcagaccttaaaggaaacagcagacaaatttgca
ggactgaatttatatgttaaaaatctagatgatagcatcaatgatgataagcttagggaa
ttgttctcagagtttggtacagtcacttcgtgcaaggttatgcttgaccctaatggcgta
agtagaggctcaggctttgttgccttttcaactgctgaagaagcatctcaagctctcatg
gagatgaatggtaaaatggtagttagcaaaccactttatgttgcagttgctcagaggaaa
gaagaaaggagagctagattgcaggaacagttttctcaaatgcgtcctggagcaatggga
cctactgttggccctcaggtgcccatgtatcctcctggcgctgcacattttggacagcaa
ctcttctatggtcaaggccctcctgctatgattccaccccaacctggatttgggtatcag
cagcaactagttcctgggatgatgccgaactttttcatgccaatgcttcagcctgggcag
cagaatcagcgccaaggaggcagacgatctggagcgggcccgatgcaacaaacacatcaa
ccacttcccttcatgcagccacagatgattcctaagggccgaggctatcgttatccccca
ggtcgcaacatgcctgatgttcctggacgtgtgcttcctgttccttacaatgtaggagga
atgccattccgagatgctgcattttcacaacccatggcaactggagctctcgcttctgct
cttgcaaacgcaacacctgtacagcagaggacgttgttgggagaaaatctgtacccactt
gtaggccagctggagcatgataatgcttccaaggtgacaggcatgcttctagagatggac
cagactgaggttttacacttgctagaatcaccagaagctttgaaagcaaaagttgcagag
gccatggaagttctaaggaatattggcccgaaaccacagcaagccaatagtgcaactgat
cggctagcctcattgtctctaaatgagaaccttgtctcttga
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