Gossypium arboreum (tree cotton): 108486311
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Entry
108486311 CDS
T05776
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108486311
03015 mRNA surveillance pathway
108486311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108486311
03041 Spliceosome [BR:
gab03041
]
108486311
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108486311
Spliceosome [BR:
gab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
108486311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
108486311
NCBI-ProteinID:
XP_017645785
LinkDB
All DBs
Position
8:81304698..81309421
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AA seq
864 aa
AA seq
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MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVKMDVIRPWIATRVTELL
GFEDEVLINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWSLLLSAQRNASGVPQ
QFLDAKEEETRKKKAESDRIANEIQKKKDKEIRENEQDRLRKMDDGDEIKAGDTELDLSS
KNMLPTKGSRARPEEERDADQRNGVGRNRSRSQSVSRSFSNSRSYSDGKQKFRSVSRSPE
SRQRSVSSDRMHPSPRRRSSTPRSRHSPSFSRSPVRRRPSYYRRRSPERRRPSYSRRRSQ
SRSPYRRGSPTPVRRRSRSPYRRRSPTPVHRRSRSPIRRYRSPSPITRRRSPLSIRRRRS
PSLVRRRRSPSPMLHGSRSPVRRRSPSPIRRKSPLPVRRRSPSPLRRRSPPPMRRRSPSP
VQQRHRRSSSPWQRRSPPSSRRSVTPSRGKSPSPYQSSSMSPVQRRSSSPVRRSPKGQRS
SSLSPGGQRMRRKLSPVGHNHSSMRSTRSDRMDQSDTDDKVPGLSPPPNKSPLSKSPSHV
RNRSGSEDRRSSSPYGSPPRQRKARIARDDSFSPERKSRELKGHRDGQGTGRRNETSESR
HSPPISRQRVSPRKVHTPERLAGSRSTDSRSRLDNVESRKKDLETKSRRSSGEVVHSGTP
DRQRSPAISEDSFQGEKQSRSRLREGKRSDERSRSHKNTKDSDEHHKVETSPMLLEKVDY
NNRGSDSDSKGSDKRRTKHKDGKRKHKRSERRKVTSDDDDSSYDSEIDDRKEAKRRKKEE
KRLRKEEKRKRSEERRRKREARRAEKLKTKRHDDDSSSDGEHAGTGKFRPDDDEEEAETE
QKKLEIELRKKALESLKAKKGISH
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggatttttccggggtacttcggccgatcaagatactcggttctctaataag
caggcgaagctactgaaatcgcagaaatttgctcccgaattggagcatctggttgatatg
acaaaggttaagatggatgttattagaccttggattgctactagggtaactgagcttctt
ggttttgaagatgaagttcttattaacttcatttacggtcttcttgatgggaaggaagtt
aatggcaagcaagttcagatatccctcactggattcatggagaagaatactgggaagttt
atgaaagagctttggtctcttctacttagtgcacaaaggaatgcaagtggtgttccccaa
cagttcttggatgccaaagaagaagaaactaggaagaaaaaggcagagtcggatcggatt
gcgaacgagattcagaagaaaaaagacaaggaaattagagaaaatgaacaagatagattg
aggaaaatggacgatggggatgaaatcaaggctggtgatacagagttggatctttcctca
aagaatatgctgccaacaaagggttcacgggcacgccccgaggaggagagagatgctgac
caaaggaatggtgttggaaggaatagatcacgttctcaatcagtcagcagatcgttttct
aattcgagaagctattcagatggcaaacagaagtttaggagtgtatctagatcacctgaa
tcacggcaacgctctgtttcctctgataggatgcatccatctcctagaaggcgatcttca
actcctcgatccaggcattcaccttctttttcacgctctcctgtaagacgaagaccatct
tattacaggcgaaggtctcctgaaagacgaagaccgtcttactccaggcgtagatctcag
tctcgttctccttatcggcgcgggtcacctacacctgtgcgccgtagatctcgttctcct
tatcggcgcaggtcacctacacctgtgcaccgtagatctcgttcacccatccgacgttat
agatcaccatcacctattacacgtcgtagatcaccattgtccattcgacgtcgcagatca
ccatctcttgtacggcgtcgtaggtctccctcacctatgcttcatggatctcgttcccct
gtgcgtcgcagatctccttcacctatacgtcgtaaatccccattgcctgtgcgccgtagg
tctccatcacctctacgacgaagatcaccacctcccatgcgacgtagatcaccttctcct
gtgcaacagcgacaccgcagatcttcatccccatggcaacgtagatcacccccttccagc
cgtaggtcagtaactccttcccgtggtaagtctccgtcaccttatcaatcaagttctatg
tctcctgtgcaacgtagatcttcttcaccagttaggaggtctccaaagggacaaagatca
tcttcgctttctccaggaggacagcgaatgcgtcggaagttgtctcctgtgggacataac
cactctagtatgaggtccacacgctcagatcgtatggatcagagtgatacagatgataaa
gtgcctggtttatcaccacccccaaataagtctcctctctccaaatccccatcacatgtg
aggaaccgatctggaagtgaagataggaggtcgtcaagtccatatggaagtcccccgagg
cagaggaaggcccgaattgctcgtgatgatagctttagtcctgaacggaaatcaagagaa
ctgaaaggtcatcgggacggtcaaggaacggggagaagaaatgaaaccagtgaaagcagg
cattcaccgcctatcagtaggcaaagggtttctcctaggaaggttcatactcctgaacga
ttggcaggcagtcggtctacagactctcggagtcggcttgataatgttgaatcaagaaag
aaagaccttgaaacaaaaagcagaaggtcttccggagaagtggttcattcaggaactcct
gaccgacagcgatcaccagcaatatcggaggattcatttcaaggtgagaagcaaagtaga
tcacgcttgagagaaggaaaaagatcagacgaaagaagtcgttcccataaaaacacaaag
gacagtgatgaacaccacaaagtagaaacttcacctatgttgcttgaaaaggttgattat
aataaccgtggttctgattcagattccaagggaagcgataagcgcagaactaagcacaag
gatggtaagagaaagcataaacggtccgagaggcgtaaagtcacttcagacgacgatgat
tctagttatgattccgaaatcgatgacaggaaagaagctaagaggaggaaaaaggaagaa
aagagattaagaaaggaagaaaaacgtaaacgtagcgaggaacggcgtcgcaaaagagaa
gcacggcgtgcagagaagctcaaaacaaaacgtcacgatgatgattctagttcagatggt
gagcatgcaggaactggaaagtttcgtccagatgatgacgaggaggaggcagaaactgaa
cagaagaagcttgagatcgagttgaggaagaaggctcttgaatcgctcaaagcaaagaag
ggtatcagtcactga
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