Gossypium arboreum (tree cotton): 108486438
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Entry
108486438 CDS
T05776
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108486438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108486438
03019 Messenger RNA biogenesis [BR:
gab03019
]
108486438
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108486438
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108486438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108486438
NCBI-ProteinID:
XP_017645981
UniProt:
A0A0B0PJQ4
LinkDB
All DBs
Position
8:46620533..46626388
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AA seq
1004 aa
AA seq
DB search
MAISNELAQKQLPSISERFKALLKQREDELRVSGGIADDDGATPTTEEIVQLYEVVLSEL
TFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYV
RYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSS
GVTSLQSSESPRPTHGIHVNPKYLRQLEQQSGADSNTQHVRGMSAGQKLYGQKHTIAYDE
FDSDHTEVPSSHVGVQRLSSTGNVGRTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLS
SEIDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSESS
LNAYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDLNGMGNKVTPRSWQNTEE
EEFDWEDMSPTLADRRSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIP
EDTVPSLSSGHGLNQIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSL
GGDKNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLK
SQPPTAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQL
PGQRPALRQRNSLHGSLQLHFTPHEARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI
SMVPSNPVPVAQPPLSIPNMPTGSLHLQGGAIPPLPPGPRPASQMMPATQNAGPLLPNQP
QGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTT
CGLRFKFQEEHSTHMDWHVTRNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLP
TEDIVEKKDDEELAVPADEDQNLCALCGEPFDDFYSDETEEWMYRGAVYMNAPSGSVEGI
DRSQLGPIVHAKCRSESSVVPPEDFVRYDGGNPEDSSQRKRLRS
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggccatatccaatgaactagcccaaaagcaactaccgtcgatatcggaacggttcaag
gctttattgaagcaacgggaagatgagctcagggtttccggcggtattgctgatgatgat
ggggcaacgccgactacggaggagattgttcagctttacgaggttgtgttatcggaacta
actttcaattcgaagcccataattactgatctcacgatcattgccggtgaacagcgagag
cacggcgaaggcattgccgatgctatttgcgcacgaattattgaggttccagtagagcaa
aaacttccttcgttatatctattagatagcattgtaaaaaatattggccgagaatatgtt
agatatttctcttcccgtttgccagaggtattttgtgaggcatacaggcaagttaatcct
aacttgcatcctgcaatgcgacatctatttggcacatggtcaacagtttttccgccttct
gtgctacgtaaaatcgagatgcaattgcaattttctcaaacggggaaccaacaatcttct
ggagtaacttccttgcagtcttctgaatcacctcgtccaacacatggcatacatgttaat
cctaagtacttgcggcagttggaacaacagtcaggtgcagatagtaatacgcagcatgta
agaggcatgtctgctggtcaaaaattgtatggtcaaaaacataccattgcatatgatgaa
tttgattctgatcacactgaggttccatcctcacatgttggtgtgcaaagattgagctca
actggaaatgttggccgtacttctcttgcaattggggctaataaatcacaactttcttca
gcttccagagtttcaagacccttctcaccatcaaggattggatctgatagacttttatca
tcagaaattgatgatcttccatcagatgattctcctagaaggtttgcagaggtagcctct
ccatctcgtcctcctgtctttgattttggacgtggaagaggaaccatcagagatgaagaa
acaagggagtggccaaggaagcacttttatggcgattaccgtaattgttctgaaagttct
ttaaatgcatacaagcttagtaatggaaatgagcgccaaacactcagagctttaatagat
gcatatggtaatgatagaggacaaggaatgtctaacagcaagcctgtacaagttgagcgg
ctggatttaaatggcatgggcaataaggtgactccaagatcatggcagaatactgaagag
gaagagtttgattgggaagatatgagcccgacattagcagaccgaaggagcaatgaattt
tcagtgtcatctgtttccacttttggaagcattggagcaaggcctgctggattagaatct
aataggagcagtcgctctaatcaaactcagctggcacttgatgaatcttcaacaattcct
gaagatacagtcccttcactgagttctggtcatggattaaatcagattcaacgtccgcgc
tatcctcaggatgcttggagtaactcatatcctttttcccagtcatcacaccagcttcat
gccaaaggaagaggaagggatttccggacacccttttcagctagtggtatatcctcgtta
ggtggtgacaaaaatgtcccccttattgagaaattgcctgagggtggttcacaatttgtt
aggcctccagctcttgttccaagatctggttcttctagccttgacactgttactgttgga
gctcaaccagccatgttacctttgactgctggggcatggcctccagtaaatgttctcaaa
tctcagccgccaactgcacacactaactattcactgcagcagcatggtaggagtcacttt
gattctttgaatcctatcaatgctgccatgaatcagggtcaaaacaaacatccatatatg
cctgaacaatttgataattttgaaagcaaggagcaaagtttgacaacggtgccacaattg
cctggacaacgccctgcattgcgacagcgaaattcgttgcatggatctttgcagctacac
tttacccctcatgaggctcgagatagttttctttcatctgcaacaggacctttaccacct
cgcttattggcaccatccatgaatcatggctactctccccaaatgcatggtgctggcatc
agtatggtcccatctaatccagtacctgttgcacaacctcctttatcaatcccaaatatg
ccaactggctcattgcatttgcaggggggagccattccacctctccctcctggtcctcgt
ccggcatctcaaatgatgcctgccacccaaaatgctggtccactgctccctaaccaacct
cagggcggtccattcactggtttgattagttccctcatggctcaaggtttgatttcattg
acaaaaccaactccaatacaggattctgtgggacttgagtttgatgcagacctcctcaaa
gtgcgacatgagtctgctataagtgctttatatgctgatcttccaaggcagtgcacaaca
tgtggccttcggttcaagttccaagaggagcatagtactcacatggattggcatgtgaca
agaaaccggatgtctaagaaccgtaagcagaaaccttctcggaagtggtttgtaagtgct
agtatgtggcttagtggtgcggaagctctgggaactgatgcagttcctgggtttttaccc
actgaggacattgtagaaaagaaagatgatgaagaattggcagttcctgctgatgaagat
cagaacttatgtgcattatgtggtgaacccttcgatgatttttatagtgatgaaacagag
gagtggatgtataggggggctgtctacatgaatgcacccagtgggtcagttgaaggcatt
gatagatcgcagttaggtcccatagtgcatgctaaatgcaggtcagagtctagtgtggtt
ccccctgaagattttgtacggtatgatgggggaaatcctgaggacagtagtcaaagaaaa
agattgcggagttaa
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