Gossypium arboreum (tree cotton): 108488725
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Entry
108488725 CDS
T05776
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108488725
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108488725
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
108488725
NCBI-ProteinID:
XP_017648502
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Position
9:complement(94904176..94906465)
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AA seq
402 aa
AA seq
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MDSLSISYAICVVSLLTISISAKEFNVLSYGASGNGITDDSLAFMKAWKDTCSEAASSAS
LVIPKGKQFLVHPLIFTGPCKSGTINVMLSGTILAPNGPDQWNASDLSTWLAFEGVNGLS
ISGFGTIDGRGKGWWDRSCRYHPGQGCFTLAPTALRFQNCNNLKMLNTNFHNSPQTHVLL
LGCQNVELGFLNIQSPGTSPNTDGIHIQFGRNVSIHNSQIADGDDCISIGDKTYDIKIND
IKCGPGHGVSIGSLGRDGEAVQVNNIKVKRVSFHGTTNGVRIKTWQTGRGLVQNVTFTNI
NFTAVENPIIIDQYYCDKLDSCKPTDTGVRINDVRYSKLIGTSQTEVAINLNCSNNVPCT
GITLDNVRLVSATHQFNQLVSSCNHAFGLNRGIIEPKSCLKI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggattcattatcaatctcatatgctatttgcgtggtctcactgttaacaatttctatt
agtgcaaaagagtttaacgttctaagttatggagcttctggcaatggcattactgacgat
tctttggcgttcatgaaggcatggaaggacacatgcagtgaagcagcaagtagtgcttcc
ttggttattccaaaaggaaaacaatttttggtgcatccattaatattcacaggcccctgc
aagtctggcactataaatgtcatgctctcaggaactatcttggcacccaatggtcctgat
cagtggaacgcatccgatttgtcaacatggttagcatttgagggcgtaaacggtctatca
atttctggctttggcaccatagatggacgtggcaagggctggtgggaccgatcatgcaga
tatcatcctggtcagggatgtttcacactagcaccaacggccctcagatttcagaactgc
aacaaccttaaaatgttgaacactaattttcacaacagcccccaaacacatgtattactg
ttaggatgccaaaatgtcgagttgggattcttgaatatacaatcacccggaacaagcccc
aacacagacggcatacacattcagttcggccgtaatgtttccattcataattcacaaatt
gctgacggtgatgattgtatttccattggtgacaagacttatgatatcaaaattaatgac
attaagtgtggtcctggtcatggtgtaagtattggaagcctaggaagggatggagaagca
gttcaagtaaacaacattaaagtgaaaagagtaagcttccatgggacaactaatggggtt
cgaatcaagacatggcagacaggcagaggtcttgttcaaaatgtgacattcaccaacatt
aacttcacggccgtagaaaatccaattatcattgatcagtactactgtgataagctggat
tcatgcaagccaacggacaccggagttcgtatcaacgatgtaaggtactcaaaattaata
gggacatcacagacggaagtggcgatcaatctgaattgcagcaataatgttccatgcacg
ggaattacattagacaacgttcgattggtgtcggcaactcatcaattcaaccaattggtt
tctagctgtaaccatgcgtttggattgaatagaggaatcatagagccaaaatcatgtctt
aaaatttga
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