Gymnodraco acuticeps: 117540943
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Entry
117540943 CDS
T09661
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03030
DNA replication
gacu03410
Base excision repair
gacu03420
Nucleotide excision repair
gacu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117540943 (lig1)
03410 Base excision repair
117540943 (lig1)
03420 Nucleotide excision repair
117540943 (lig1)
03430 Mismatch repair
117540943 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gacu03032
]
117540943 (lig1)
03400 DNA repair and recombination proteins [BR:
gacu03400
]
117540943 (lig1)
Enzymes [BR:
gacu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117540943 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117540943 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117540943 (lig1)
DNA replication proteins [BR:
gacu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117540943 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117540943 (lig1)
DNA repair and recombination proteins [BR:
gacu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117540943 (lig1)
NER (nucleotide excision repair)
Other NER factors
117540943 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117540943 (lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Glyco_hydro_92
Motif
Other DBs
NCBI-GeneID:
117540943
NCBI-ProteinID:
XP_034063793
UniProt:
A0A6P8TIG1
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MKAVAQATGRQLDKIKADAQEKGDLGLVAESSRSNQRIMFQPASLTAGGVFRKLKEIGSM
SGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQ
GFPPAVIDAGKGMSAESRRAWIESKSLILKQTYCEMPNYDILIPVLLKEGIDELPNHCKL
TPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRVFSRNQEDN
TTKYPDIISRIPKVKKDSVVSCVLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQ
VCVYAFDLLYLNGESLVRQPLGRRRALLRESFSEVEGEFVFARYIDSDNTDSIAEFLEQS
VRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGA
YGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHFNFLKEHILPKPRPYYRVDQSAEPEV
WLDAMQVWEVKCADLSLSPVYKAAMGMVDPVKGISLRFPRFLRIRDDKKPEDATTGAQIA
DLYKKQQQIQNQGEKGDLEDYY
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctgttgctcaagccactgggcgacaattggacaaaatcaaggcagatgcgcag
gagaaaggagatctgggtcttgtggccgagagttcccgtagcaaccagcgcataatgttc
cagccggccagtctcacggcagggggcgtgttcaggaaattgaaggaaatcggcagcatg
agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgc
cgtttttccgaggcgcgctacatagtcaggtccctggctgggaagctgaggatcggcctg
gctgagcagagcgtcctatcagcactgagccaggctgtgtgcctcaccccccctggacaa
ggtttccctcccgctgtgatcgatgcagggaaggggatgagcgctgagagcagacgggcc
tggatcgaatcgaagagtctcattctcaaacagacttactgcgagatgcccaattacgac
atcctaatccccgtcctgctaaaagaaggcatcgacgagctacccaatcactgcaagctc
actccaggtgtgcctctgagacccatgttggctcaccccaccaagggtgtcggcgaggtg
atgaagaggtttgacgaggcggcgtttacctgcgagtacaaatacgacggagagcgcgct
cagatacacattctggagaacggagaggtgcgagtgttcagccgcaaccaggaagacaac
accaccaaatacccagatatcatctctcgcattcccaaggtgaagaaggattctgtggtg
tcctgcgtcctggacgcggaggcggtggcctgggatcgagagaagaaacagatccagccc
ttccaggtcctcaccacccgaaagagaaaggacgtggacgcttcggagatcaaagtgcaa
gtgtgtgtgtacgcctttgacctcctctatctcaatggagagtccctggtgcggcagccg
ctgggtcggcgtcgggctttgctgagggaaagcttctcggaggtggagggagagtttgtg
ttcgcccgatacatcgactccgacaacaccgactccatcgcagagttcctggagcagtct
gtccgagactcctgcgagggtctaatggtgaagactctggagaaggatgctacctatgaa
atcgctaagcgctctcacaactggctcaagctgaagaaggactacctggacggggtgggg
gacacgatggatctgtgtgtgatcggcgcctacctgggaaaaggcaagagggcgggcgcc
tatgggggcttcctgctggcctgctacgatgaggagaacgaggagtttcagtctgtgtgc
aagatcgggacaggcttcaaagatgaggatctggagcagcatttcaatttcttaaaggag
cacattctgcctaagccccgcccctactaccgtgtggaccaatcagcagagcccgaggtg
tggctggatgccatgcaggtctgggaggtgaagtgtgccgacctatcgctgtctcccgtc
tacaaagctgccatggggatggtggatccagtgaagggcatttctctgaggttcccccgc
ttccttcggatcagagatgacaaaaagcctgaggacgccacgactggagctcagattgct
gatttgtacaagaagcagcagcagatccagaaccagggggagaagggcgatctggaggac
tactactga
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integrated database retrieval system
