Gambusia affinis (western mosquitofish): 122824948
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Entry
122824948 CDS
T07758
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122824948 (ddx1)
03016 Transfer RNA biogenesis [BR:
gaf03016
]
122824948 (ddx1)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122824948 (ddx1)
Spliceosome [BR:
gaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122824948 (ddx1)
Transfer RNA biogenesis [BR:
gaf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122824948 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
122824948
NCBI-ProteinID:
XP_043961828
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All DBs
Position
LG22:13155391..13161448
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPI
IQIVYETLKDQQEGKKGRAAVKTGGAIFNTWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCQDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGSAFDIPQNLSSQGFFASCVLKNAELKF
NFGGEDFKHPPKSGFVALDQASESHTIKSSQTGSAKVTQVKASSNTPKALIIEPSKELAE
QTFNNVKHFKKYVENPKLRELLVIGGVPAKEQLAVLEQGVDIVVGTPGRLDDLVSTGKLS
LSQVRFLVLDECDGLLTAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKADRQWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKMLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKNNLDRFKRKDVKLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCQNRGRGCYNTRLKDDGGCTIWYNEKELLS
EIEEHLKCTITQCDTDIKVPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELAILER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagccttttctgaaatgggtgttatgcctgaaatcgcgcaggctgtggaggagatg
gattggctactgccaacagatatccaagcagagtccattcccttgattcttggtggagga
gatgttctcatggcagcagaaactggtagtggaaagacaggcgcctttagtatcccaatc
atccagattgtctatgaaaccctgaaggatcagcaggagggcaagaagggcagagccgct
gtcaaaactgggggagcaattttcaacacctggcagatgaatccatatgatcgtagccca
gcctttgcaattggccccgatggactctgctgccagagcagggagttcaaagagtggcac
ggctgccgctccaccaaaggtgtcacaaaagggaagtactactatgaggtaacctgccaa
gaccagggtctctgccgggtgggttggtctaccagtcaagctgctctggatttgggaact
gacaagtatggctttggttttggtgggaccggaaagaaatccaacaacaagcaatttgac
agctatggggaggagtttaccatgcatgacactatcggatgctacctggatttagataag
gggcagatctccttctctaaaaatggaaacgacctgggatcggcttttgacatccctcaa
aatttaagcagccagggcttttttgcttcatgcgtcctaaagaatgctgagctgaagttc
aactttggaggagaagacttcaaacatccccctaaaagtgggtttgttgctctggatcag
gcatcagagagtcacaccattaaatcctctcaaacaggcagtgccaaagtgactcaagtg
aaggcttcatcaaacacacccaaagctctgatcattgagccatccaaagagctggcagag
caaaccttcaacaatgtcaagcattttaagaaatatgtggaaaatcccaagctaagggag
cttcttgtgatcgggggtgtaccagctaaagagcagttagcagttctggaacagggggta
gacatagtggtgggaacacctggaagactggatgaccttgtttccactggaaaactcagt
ctgtcccaagtccgtttcctggttctggatgagtgtgatggtctcctaacagccggatat
acagacttcatcaataggatccacaaacaaatccctcaggtgacctctgatggcaagaga
ctgcaggtcattgtgtgctctgccacactgcattccttcgacgtaaagaagctctccgaa
cgcatcatgcactttcccacttgggtggaccttaaaggtgaggactctgtcccggagtcc
gtccaccatgtggtggtgccggtcaacccaaaggccgaccgacagtgggagcgcctcggc
aagaaccacatccggactgatgaagttcatgccaaagataacacccgaccaggagccaat
acaccagaaatgtggtcagaagctatcaagatgctgaagggcgagtacacggtcagagcc
atcaaagagcacaaaatggaccaggccataatcttctgtcgcaccaagatcgactgcgac
aacatggagcaatacttcattcagcaaggaggaggtccagacagcaaaggtcatcagttc
tcctgcgtttgccttcatggtgatcgaaagccgaatgagaggaaaaataacttggatcgc
ttcaagagaaaagatgtgaagctgctgatctgcacagatgtggccgccagaggaatcgac
atcagcggcgttccttacgtgattaatgtcaccctgcctgatgagaagcagaactatgtc
catcgtatcggcagagttggtagagcagagagaatgggacttgccatctccctagttgct
atggaaaaagaaaaggtgtggtaccatgtttgtcagaaccgagggagaggctgctacaac
acccgactgaaggatgacggagggtgcaccatatggtacaacgagaaggagcttctgtct
gaaatcgaggagcatctgaaatgcaccatcactcagtgtgacacagatattaaagtacct
gtagatgagtttgatggaaaagtgacgtatggacagcgcagagctctgggaggcggaaac
tataagggtcatgtggatgttctggcccccacagtccaggagttggctatccttgagaga
gaagctcaaacatcttttcttcatttaggatacatgccaaaccagctgttcagggccttc
taa
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