Gambusia affinis (western mosquitofish): 122839115
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Entry
122839115 CDS
T07758
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122839115 (upf1)
03015 mRNA surveillance pathway
122839115 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122839115 (upf1)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122839115 (upf1)
5.6.2.5 RNA 5'-3' helicase
122839115 (upf1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122839115 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122839115 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
122839115
NCBI-ProteinID:
XP_043986382
LinkDB
All DBs
Position
LG10:complement(22599580..22619121)
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AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVAKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHHGNGPNSQA
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgactttaccgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgaaggtcttcacaatggaggaatggatgactctgtggccaaaaccagccagttg
ttgggcgaactcaactttgaggaggatgaagaagacacctactacaccaaagatctccca
atacacgcatgcagctactgcggcatccatgacccagcgtgtgtggtgtactgcaacacc
agtaagaagtggttctgtaacggccgtggcaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgactctgcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccagct
aaagccgactctgtggtggttctgctctgcaggcagccgtgcgcgagccagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcggagcaagagcagctccgcgctcgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggcgctactttggaagac
ctggagaaacccggagtggatgaagaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatcttcggccctttggtcaaactggaggccgactacgacaaaaag
ctaaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcaggtgatatgcggctgatgcag
ggcgatgagatctgcctgcgctacaaaggagatctggctcccctgtggaaaggcatcggc
catgtcatcaaagtccccgacaactatggggatgaaattgccattgagctgcgcagcagc
gtcggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaact
tcctttgacaggatgcagagcgccctgaagacgtttgctgtcgatgaaacctccgtgtcc
ggttacatttaccacaaacttctgggtcacgaggtcgaagacgtcaccatcaagtgccag
ctgccgaagcgcttcaccgctccgggcctgccggacctgaaccactcacaggtttacgct
gtaaagacggtgctgcagcggccgctcagtctcatccaggggccgcccggcaccggcaag
accgtgacctccgccaccatcgtgtaccacctgtcccgacagggaaatggaccagtcctg
gtgtgcgctcccagtaacatcgccgtggatcagctgacggagaagatcgacaagaccggc
ctgaaggtcgtcaggttgtgcgccaagagccgggaggccatcgagtctccggtctctttc
ctggcgctccacaaccagatcagcaacatggacagcatgccggagctccagaagctgcag
cagctgaaggatgagaccggagagctgtcgtctgctgacgagaagcgttaccgggctctg
aagcgcaccgccgagagggagctgctcatgaacgctgatgtgatttgctgcacctgcgtt
ggagctggagatccccgtctggccaagatgcagttccggtccattctgatcgacgagagc
acccaggccaccgagccggagtgcatggtcccggtggtgctgggagcaaagcagctgatt
ctggtgggcgaccactgccagctgggcccggtggtgatgtgtaagaaagcggcaaaggcg
ggtttgtctcagtctctgttcgagcgactggtggtgctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccgtccaacatcttctacgag
ggctccctgcagaacggcgttacagcagctgatcgcatcaagaaaggcttcgacttccag
tggcctcagccggacaaacccatgttcttctacgtgactcagggtcaggaggaaatcgcc
agctctggaacgtcatacctgaacaggacggaggcagcaaacgtggagaaaatcaccacc
aggttgctgaaggcaggagcgaaaccggaccagatcggcatcatcacgccgtacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctcgctgcacaccaagctgtat
cagcaagtggaaatcgccagtgtggacgccttccagggcagagagaaggatttcatcatc
ctgtcctgtgttcgggccaacgagcatcagggcatcggcttcctgaatgacccgcggcgc
ctgaatgtggcgctgaccagagcaaagtacggagtgatcatcgtggggaaccccaaagcg
ctgtccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctg
gtggagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaaa
ctggtcaacaccatcaacccgggggggcgtttcatgagcaccgccatgtacgacgcccgc
gaggcgctcatcccaggctccgcctacgaccgcagcagcgccgctgggcgtccgtccaac
atgtatttccaaactcacgatcagatcgggatgatcggaaccgggccgggtcagatggcg
gccatgaacatcccgatacccttcaacctggtgatgcccccgatgcctccgcccagctat
ctgggtcagaccaacggcccggctgcaggccgcggtgccatgaagggaaaacctggccgt
ggaggaaggcagcgggtccgcggctcggctcaccacggcaacgggcccaacagccaggcc
agccaggacggggcttcccagtccttctcccaggggccgctgactcagggttacatctcc
atgagccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggat
agctacctgggcgatgagttcaagtcccagatcgacgtggctttgtcccaggactcgact
taccagggtgaacgtgcgtaccagcatggcggggtgactggactgtcacagtactaa
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integrated database retrieval system
