Gambusia affinis (western mosquitofish): 122841388
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Entry
122841388 CDS
T07758
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03410
Base excision repair
gaf03420
Nucleotide excision repair
gaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122841388 (lig1)
03410 Base excision repair
122841388 (lig1)
03420 Nucleotide excision repair
122841388 (lig1)
03430 Mismatch repair
122841388 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122841388 (lig1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122841388 (lig1)
Enzymes [BR:
gaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122841388 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
122841388 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122841388 (lig1)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122841388 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122841388 (lig1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122841388 (lig1)
NER (nucleotide excision repair)
Other NER factors
122841388 (lig1)
MMR (mismatch excision repair)
Other MMR factors
122841388 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
122841388
NCBI-ProteinID:
XP_043990597
LinkDB
All DBs
Position
LG12:complement(23851382..23925518)
Genome browser
AA seq
1002 aa
AA seq
DB search
MQRSIASFFQPRNKARDSQKKMADEPVNKPVKSPLKVQNGVQEADSPIKKAAKRSRQIVD
SDEDEVPLVKEQGDKRAPAKTEKTNDVFKAAPTPLPPTPAPSTPVTLETPATLASPTSSG
TPTTPSSTSTSRIVKRKTARKMFPKRKLDESESWKGESEVEEEQGQQNKRPRVESSVSSA
GNTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEEEKAKKEEEQVEEKISDEKEKKAE
GAEKKNEAKEKTDDEKGPSVAKDKVVEKDTKDTGSPKSQMEEKKQKEAKEQKDKEPAKKT
PISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSEEEQKDAKGESTSGETDYDPSRPNYH
PVDHACWKRGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC
LNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMF
QPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL
AEQSVLAALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYD
VIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA
QIHILESGEVRIFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDTEAVAWDREKKQIQP
FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFL
FARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG
DTVDLCVIGAYLGKGKRTGTYGGFLLACFDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKE
HILTKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMADAEKGISLRFPR
FLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcgttttttcagcccaggaacaaggctagagacagccagaag
aaaatggcagatgaaccagtgaacaagcccgtaaagagccccttgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggccgccaagcgcagccggcaaatcgtggac
agcgacgaagacgaggtgccgcttgtaaaagaacaaggcgacaaaagagctcccgctaaa
accgagaagacgaatgatgtgttcaaggccgctcccaccccgttgcctccaacgccggcc
ccatccacacccgtaaccctggaaaccccggcgacgttggcctccccaacgtcttcaggg
acgcccactactcccagttccacctccacatctagaattgtgaaacgcaaaactgcgagg
aagatgttccccaagaggaagctggatgagagcgagagttggaaaggggagtctgaggtt
gaggaggagcagggtcagcaaaacaaacgaccccgcgtggagagcagtgtcagcagtgca
gggaacaccgatgaacccatggaggagggagcaaaggaagaaaaggttgaaaagccagtg
gctgaggctaacagcccagacgaggaggtggggaatgagaaaacagaagaagagaaggcc
aagaaggaggaggagcaggtagaagaaaagatctctgatgagaaagaaaagaaagctgag
ggggcggaaaagaaaaatgaagcaaaggagaagacggatgatgagaaagggccctctgtc
gccaaagacaaggtggttgaaaaggacacaaaagacacagggagcccaaaaagtcaaatg
gaagaaaaaaagcaaaaagaggcaaaggagcagaaagataaggagccggccaagaaaacc
ccaatcagcagtttctttgctcccaggaaagcagcagttaagacagagaaaccagagaag
aacgaaggagagaaaaagacgagtgctgagaggaagagctccgaggaggaacagaaagac
gcaaaaggtgaatcaacctcaggagagacggactacgatccatccagaccaaactaccat
ccggtggaccacgcctgctggaaacgaggccaaaaagtgccgtacttggcagtggctcgc
acctttgagaaaattgaagaggactctggcaggcttagaaacatcgagacgctgtcgaac
ctgctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgt
ctgaaccagctcggccccgcctaccttgggatggagctcggcgtcggggagacggtgctt
atgaaagctgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggaggcgcag
gagaagggagatttgggcctcgtggccgagagttcccgtagcaaccagcgcaccatgttc
cagccggccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgccagcatg
agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcttgc
cgcttctccgaagcccgctacatagtcaggtctcttgctgggaagctgaggattggcctc
gctgagcagagtgtcctcgccgccctgagccaggccgtctgcttgaccccgcctggacaa
ggtttccctcctgctgtgattgatgctgggaagggcatgagtgctgagagcaggcgggcc
tggatcgaagagaagagcctcattctgaaacaaacatactgcgaaatgccaaattatgac
gtcatcatcccagttttactgaaagcaggcattgaccagctgcccaaacactgcaaactc
actccaggagtcccgctgaggcccatgttggctcaccccaccaagggtgtcggcgaggtg
atgaagaggtttgacgaggcagcgttcacctgcgagtacaaatatgacggagagcgtgca
cagattcacattctggaaagcggtgaagttcggattttcagccgcaaccaggaagacaac
accagcaaatacccagatatcatctcgcgcgtccccaaggtaaagaaggactctgtagtg
tcttgtgttctggacacggaggcagtggcctgggatcgagagaagaaacagatccaaccc
tttcaagtcctcaccactcgtaaaagaaaggatgtggacgcctcagagatcaaagtccaa
gtgtgcgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcgacagccg
ctgtgtcggcgtcgggagctgctgagagagagcttcacagaggtggagggagagtttctg
ttcgcccgttccatcgattctcacgacactgacgccatcgcagagttcctggagcagtcc
gtccgagactcctgcgagggcctgatggtgaagactctggagaaggacgcgacctatgag
attgccaagcgatctcacaattggctcaagttaaagaaggactacctggacggtgtgggc
gacacagtggacctctgcgtgatcggtgcctaccttggaaagggaaaaagaacaggcaca
tacggaggcttcctgttggcctgctttgatgaagacaatgaggagtttcagtcagtctgc
aagatcgggacaggctttaaggatgaagatctggagcagcattacaagtttttaaaggag
cacatcctgaccaagccccgcccatactaccgcgtggaccaatcagccgagcccgatgtg
tggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcacccgtc
tacaaggctgccatgggaatggcggatgcagagaaaggcatttctctgcggttccctcgt
ttccttcgcatcagagacgacaagaagcccgaggacgccaccaccggagctcagattgct
gatttgtacaagaagcagcagcagattcagaatcaaggggagaaagctgacccggaggac
tactactga
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