Gambusia affinis (western mosquitofish): 122845263
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Entry
122845263 CDS
T07758
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122845263 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122845263 (ddx46)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122845263 (ddx46)
Spliceosome [BR:
gaf03041
]
Complex A
U2 snRNP components
U2 related factors
122845263 (ddx46)
Complex B
122845263 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
122845263
NCBI-ProteinID:
XP_043997401
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All DBs
Position
LG15:26230883..26247164
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AA seq
1069 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDNKRSKKDDRDRSRRDRSRSRDRRRSRSRDRKR
TRRSRSRDRRRSRSRERKRSGSRSRTRRSRTGSPAKSKKSDEKAKSKEKEKESVEPVSEK
KKVKEEKEDEKVEDVSSKQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELE
EMKQGKKWSLEDDDDDDEEGPALMEVDEDEEEGEGKGEGKEKDAEEVKKEEGEAEKEAPM
EPQEEEDEVDPLDAYMEEVKQEVKKFNIGPMKGNDKKGATTVTKVVTVVKTRKQPMTHKK
KGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHTKIQYEPYRKNFYVEVP
ELAKMTVEEVNAFRLELEGIIVKGKGCPKPIRTWVQCGVSMKILNSLKKQAYEKPTPIQA
QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPISVIMTPTRELALQ
ITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNL
RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIE
VQVGGRSLVCSDVEQHVLVIDEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLM
KASYPCLSLHGGIDQYDRDSIINDFKTGVCRLMVATSVAARGLDVKQLILVVNYSCPNHY
EDYVHRAGRTGRAGNKGYAYTFITEGQARYAGDILKALELSGSAVPPELEQLWASFKDQQ
KAEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESM
FNSKKRVKDLSAPGAAAGQAGGVTAAAAAPGGPAGLMTGSAGNNQKLEMAKRLALKINAQ
KNLGAEAQDVMQQATNAILRGDPIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQA
AEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEG
ERKIYLAIESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtctagacactacaggaagcgctcagcgtcccgcggccggtcgggctcc
cggtcgaagagtcgctccccggacaacaagcgctcaaagaaagacgaccgagaccgaagc
aggagggatcggtccaggagcagagaccgcaggaggtctcggtccagagacaggaaaaga
acccggcggtcccggagcagagaccggaggaggtccagaagccgggagaggaagagatcg
ggcagtcggagtcgaactcgcaggtcccgaaccggcagcccggcaaagagcaagaagtca
gatgaaaaagccaagagcaaagaaaaggagaaggagagcgtcgagccagtttccgagaag
aagaaggtgaaagaggagaaggaagacgagaaggtggaggacgtaagttcaaaacaagat
tttgaccaaaacaaactggaggaagaaatgaggaagaggaaggagcgtgtggagaaatgg
agagaggagcagaggaagaaggcgattgaaaacatcggagagataaagaaagaactggag
gaaatgaaacagggcaagaaatggagcctggaggacgacgacgatgatgatgaggagggt
cctgctctgatggaagtggatgaagatgaagaggagggggaaggaaagggggagggaaaa
gagaaggatgcagaggaagtgaagaaggaggagggcgaggctgagaaggaggcgccgatg
gagccgcaggaggaggaggacgaggtggatcctctggacgcctacatggaggaggtcaaa
caggaagtgaagaagttcaacatcggacccatgaagggaaacgataagaaaggagcaacg
acggtcaccaaagtggtgacggtggtaaagaccaggaaacaaccgatgacacacaagaag
aagggagagctgatggagaacgaccaggacgccatggagtactcgtcggaggaagaggag
gtggacctgcagacggctctgacgggttttcagaccaagcagaggaaagttctggagccg
gtcgaccacaccaagatccagtacgagccgtaccgcaagaacttctacgtggaagttcct
gagctggccaagatgaccgtagaggaagtgaacgccttcaggctggagctggaaggcatc
atcgtcaagggcaaaggttgtcccaaacccatcaggacctgggtccagtgtggcgtgtcc
atgaagatcctcaactccctgaagaagcaggcgtacgagaagccgacgcccatccaggcc
caggccatccccgccatcatgtccggcagagacctgatcggcatcgccaagaccggcagc
gggaagaccatcgccttcctgctgcccatgttccgccacatcatggaccagcgccccctg
gaggagggagaggggcccatctctgtaatcatgactcccaccagagagctggctctgcag
atcaccaaggagtgcaagaagttctccaagccgctggggctgcgagtggtgtgtgtttac
ggcgggacgggaatcagcgaacagattgcggagctgaagcgcggagcagagatcatcgtt
tgcactccagggaggatgattgacatgctgggcgccaacagcggccgggtcaccaacctg
cggagggtcacatacgtggtgctggacgaagcagacaggatgtttgacatgggctttgag
ccacaggtgatgcgtatcgtagacaacgtgcgtcccgaccggcagacggtcatgttctcc
gccaccttccccagagccatggaggcgctggcccgcaggatcctggccaagcccatcgag
gtccaggtcggaggtcgcagtttggtctgctcagatgtggagcagcacgtgctggtgatt
gatgaggagaagaagttcctgaagctgctggagatcttgggtcactaccaggagaaagga
tccgtcatcatctttgtggacaaacaggagcatgcagacggcctgctgaaggacctgatg
aaggcctcgtacccctgcctgtccttacatggaggcatcgaccagtacgaccgagacagc
atcatcaacgactttaagacgggagtgtgtcgcctgatggtggccacctcggtggcggcc
agagggttggacgtcaagcagctcatcctggtggtcaactacagctgccccaaccactac
gaggactacgtccacagggcggggcgcaccggcagggcgggcaacaagggttacgcctac
accttcatcacagagggccaggctcgctacgctggcgacatcctaaaggccttggagctg
tcaggctccgccgttcctccagaactggagcagctgtgggcttccttcaaggaccagcag
aaggcggaaggtaaggtgattaagagcagcagtggcttctcagggaaaggttttaagttc
gatgagacggagcacgctctggccaacgagaggaagaagctgcagaaagctgcgctggga
ctgcaggactctgacgatgaggacggcgccttggatatcgaggagcaaatagaaagcatg
ttcaactctaagaagcgggtgaaggacctgtcggcccccggcgcggccgccggacaggcc
ggcggcgtcacggctgcagcggcggcccccgggggcccggcgggcctcatgaccggatcc
gctggaaacaaccagaagctggagatggccaaaaggctggcgctcaagatcaacgctcag
aagaacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgc
ggcgaccccatcatgaccccgtcggtgtcggccaagacgatcgcggagcagctggcggag
aagatcaacgccaagctgaactacacgccggtggagaagctggaggaggagcggcaggcg
gctgaacaggccgaaaccgtcaagagatacgaagaggagctggagatcaacgacttccct
cagacggcccggtggaaggtgacgtctaaagaggctctgcagaggatcggtgaatattct
gaggcggccatcaccatcagaggaacgtatttccctccaggcaaagagccgaaggaggga
gaacgaaaaatctacctggctattgagagtgcgagtgaactggctgtgcagaaagccaaa
acggagattacacggctaataaaggaagagctcatcagattacaaaattcctaccagcca
acaagtaaagggcgctacaaggtgttgtag
DBGET
integrated database retrieval system
