Gambusia affinis (western mosquitofish): 122845705
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Entry
122845705 CDS
T07758
Symbol
fancm
Name
(RefSeq) Fanconi anemia group M protein isoform X1
KO
K10896
fanconi anemia group M protein
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122845705 (fancm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122845705 (fancm)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
122845705 (fancm)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCM-MHF_bd
DEAD
Helicase_C
ResIII
ERCC4
Motif
Other DBs
NCBI-GeneID:
122845705
NCBI-ProteinID:
XP_043998012
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Position
LG16:22711736..22755693
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AA seq
1899 aa
AA seq
DB search
MSGGSHQRTLFQTWGASVSQNKAVQSGKDARKATGAIRTSSSRAQVAPTNPPPHQQKSPW
TVIGQNSTHTAVRQEDIIHGDEDDDDLMVVAVYEAERSLQLEKSDIIQNNHATGQSVAPF
SAPPCRKRYPDLPGFDSSSADVWIYPTNYPIRDYQLKISEASLFQNTLVCLPTGLGKTFI
ASVVMYNFYRWYPAGKIVFMAPTKPLVAQQIEACYKVMGIPQNHMAELTGSTAAKQRQEV
WKSKRIFFLTPQVMVNDLSRETCPAKEIKCVVIDEAHKALGNHAYCQVIRQLSSQTLQFR
VLALSATPGGDAKSVQSVISNLLISHIELRSEESPDIQAHSHQRSVEKVVVPLGEKLSGH
QARYLQVLEKFMSRLVQNRVMGHQDLRTLSKYQLILARDQFRKNPPPHIKGSHQGVLEGD
FALCISLYHGYELLVQMGLRSLFFYLQGIMDGSREMSRAKNELQRTPAFMDLYQEMETMF
LTPPDGPFIYSHPKLEKLEEVVLQHFNVWAQSSAETNGGISTRVMIFSSFRESVQEIASM
LNRHAPLIRVMTFMGQASAGKGVKGFTQKEQLEVVHRFRQGGFNTLVSTCVGEEGLDIGE
VDLIVCFDAQKNPIRLVQRMGRTGRQRQGRIVVILTEGREERTYNQSQSNMRSVYKSITG
SRNGFRMYPSSPRMLPEGVNPQLHKIHITSGHFDHRESSRRSVRGRRSNTAGRASLIHPQ
NLIRQESPTSDGFLSRAEYSVWSSSMRLEEHEAHPTLKLSHFMSIPSDSTPQEETSRDKP
PSRELSLWEWRHWQHKLLPFHAVDHSLRCRHFSAVMQLIDGMRDESEGECLYEQQLLPHL
QRDDADEKRQKKPKAPKNCSKINRIKPSHSSRSELEYIDEEAEMEDAASRLIPEKRRLPD
ERLTDDLNPEQADSPSHNSDDDCVIVNQTLRDPANPGEVNTKTNEVDDLQEMFYLPITYP
ALLSPKKLKNLNDILVNVAELLSRSPPSPENILVAGRTLTGLPPSPEPDDQPFSVRFSLE
VDDDDDVEGGIEDGAPHSPTWDEVFEDESIRFDKKEMDLKSVDNAEERVSMDADCVSEDR
VNVQMDESMDLFEDDEAFMQMTISDIPTPEDRITAEATINDEGIGKISKDCTEILNVVNK
TPFSDTRLNIQTSHNSREDHYNKISFLVKANPEPPDSSHDLFSVNFDLGYSLEDSEDEVE
VASSPSPKKQAESVVSNSSTPRRSFAGLFKESQSSSQIKTDYWRSKTEELPSPVSLLGPR
QMLLSRVAEPDSSKMNQKQAEGDSLQELIHVGESSPRPAECCSDSEEEVVPLKRRHHKVN
PLSSPDVSKSLSDVDSPVVAKKKRSSVLNTTDESQIGDFSDDDFQNCSILVRRKTTTGDK
RQQIQQPSNKNRRRQKVRQFLDEEAELSEDEEGADVSSDEEDGADLNRSLEGFVVDNMHL
SQGLNDSEMHGVYLKSVRSPAVRGKFKMSYKNHQNMEIFSQVPEMDETYAEDSFVVGSDE
EEEESNEEEPEDVELLPDVSLIDGRRQYATRRRIFLHRARAGLETNARTQPAAEQTTRTR
TKRSRVVCLNESSEEEMEGVGKNQKTVSSAYASVASKVSLLSKEQSEEQKNERCRQRLEN
QHLLSDELDFAEQEPTFITGLPSASSAAQGSAPQDPVPAVTKPPPPLPGSVSILVDSRCT
GGMVELVMSLRQRHGADVQVCTLDSNYFIVSNRMAVMRQSQSDLAAMQNRKRLAERLSNM
QGLFERVCLIVEKDRSKQGEVSRPFQRTRYYDNTLVGLVRAGVRLLWSDGAEESAGLLAD
LAKLERRKGHGIAVPLKVKGQRREQALQMYLSLPSVSHVHALNLLHNFSCVAQLMNGSVE
SIQKGGCMSRSRAEEIYRFLRRSCDSAHFTKTPKAGKNG
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtggttcacatcagagaactttgttccagacttggggggcttctgtttcccag
aacaaagcggtccaatcggggaaggatgcccgaaaggctactggggcgatccggacatcc
tccagcagagctcaggtagctccaacaaaccctcctcctcatcagcaaaaatctccatgg
acagtaattggtcagaatagcacacatacagcagtgagacaagaagacatcatccatgga
gatgaagatgacgatgacttaatggtggtcgctgtctatgaagctgaaaggagcctccag
cttgagaagagtgacattatacaaaataaccatgcaactggacaaagtgttgctcccttt
agtgccccaccctgtaggaagagatatccagatctcccaggttttgacagctcctcagca
gacgtgtggatctatcccaccaactatcctattagagactatcagctgaagatatcagag
gcttccctgttccagaacacactggtgtgtctccctactggtttaggaaaaaccttcata
gcctctgtggttatgtacaacttctaccgctggtatccagcaggaaagattgtgttcatg
gctcccaccaaacctctggtggcccagcagatcgaggcctgttataaagtgatgggaatc
ccccagaaccacatggctgagctgacaggcagcacagcagcgaagcagaggcaggaggtg
tggaagtccaaacgcatcttcttcctcacccctcaggtgatggtgaatgatctttctaga
gaaacttgtcctgcaaaggagatcaagtgtgtggtgatcgatgaagctcacaaggcattg
ggtaaccatgcctactgtcaggtgatcagacagctgagcagtcagacgttgcagtttcgc
gtcctggccctcagtgccactccaggaggagacgcaaagtcggttcagtccgtgatttcc
aatttgctgatttcacacatcgagctgcggtcagaggagagcccggacatccaggctcat
tcccaccagcggagtgtggagaaagtggttgttcctctgggggagaaactttcaggccac
caggctcgctacctccaggttctggaaaagttcatgtcccgtttggtccagaaccgagtg
atgggccaccaggacctgcggacgctcagcaagtaccagctcattctcgccagggatcag
ttccgcaagaacccgccgccgcacatcaagggttctcaccagggagtgctggagggcgac
tttgccctttgcatcagcctgtaccacggctacgagctgctggtccagatgggcctccgg
tcgcttttcttctacctccagggaatcatggacggatccagagaaatgtccagagctaag
aatgagttacagaggactccggcgttcatggatctgtaccaggagatggagacgatgttc
ctgacgccaccagacggtccattcatttacagccatcccaaactggagaaactggaggag
gtggtgttgcagcactttaacgtgtgggctcagagctcagcagagacaaatggcggaata
agcacacgtgtgatgatcttctcctcttttcgtgaaagcgtccaggagatcgctagcatg
ctaaaccgacacgcgccactgataagggtcatgacctttatgggccaagcctctgctggg
aagggcgtcaaaggcttcacccaaaaggagcaactggaggtggtccacaggttccggcag
gggggctttaacactctggtttctacctgtgtgggggaagaagggctggatatcggtgag
gtggacctcatcgtgtgcttcgacgctcagaagaatcccatccgcctggtgcagcgaatg
ggacgtaccggccgccaacgacagggacgaatcgtggtcatcctgacggagggacgggag
gagaggacctacaatcagagtcaaagcaacatgcgcagcgtgtacaagtccatcaccggc
agcagaaacgggttccgcatgtatcccagcagcccccgcatgctgcctgagggcgtgaac
ccccagctgcataaaatacacatcacctcaggccactttgaccacagagagagcagcagg
aggtccgtcagaggtcggaggtcaaacaccgcgggacgggcttcactcatccaccctcag
aacctgattcgacaggagagtcccacatcggacggctttctgagcagagcagaatattct
gtgtggtcgtccagcatgaggctggaggaacacgaggctcatccaactctgaagctgtcc
cacttcatgtccattcccagtgactcaacacctcaggaggagacgtccagggacaaacca
ccgtccagagagctgtctttgtgggaatggagacactggcagcacaaactgcttcctttc
cacgccgtcgatcactccctccgctgccgccacttctctgcagtgatgcagctcatagac
ggcatgagagacgagagtgagggggagtgtctttacgaacagcagcttcttcctcacctc
cagagagatgatgctgatgaaaagaggcagaagaaaccaaaagccccaaagaattgctct
aaaatcaataggatcaaaccgtctcactcatcccggtccgaactggaatatatcgacgag
gaagcagagatggaggatgcagcatcacgattgatcccagagaaacggaggctcccagat
gaacgtttgactgacgacttaaaccctgaacaagccgattctccatcacacaactctgat
gacgactgcgtcatcgttaaccaaaccctcagagatcctgcaaatccaggcgaagttaat
acaaaaactaacgaagtcgatgatcttcaagagatgttctaccttcctataacatatccc
gcacttctgtcgccaaaaaaactcaagaacctgaacgacattcttgttaacgtagctgag
cttctctctcgatctccaccttcgccggagaacattttagtagcaggaaggactttgacg
ggtcttccaccttcacccgagccggacgatcaacctttctccgtcaggttcagcttggaa
gtggacgatgacgacgacgtagagggtggcattgaggacggcgcgcctcatagtcccacc
tgggatgaggtttttgaggatgaaagtatcagattcgacaagaaggaaatggacttaaaa
agtgttgacaatgcagaggagcgcgtttccatggatgctgattgtgtgagtgaagacaga
gttaatgtccagatggatgagagcatggacttgtttgaagacgatgaggcgttcatgcaa
atgaccatttcagatattcctactcctgaggatcgcattacagccgaggcaactatcaac
gatgaaggcattgggaagatttccaaagattgcacagaaatattaaacgttgtaaacaaa
actcctttctcagacactcggctaaacattcaaaccagccacaactcaagagaagatcac
tacaacaaaatttcgtttttagtgaaagcaaatcctgagccaccagattcctctcatgat
ctgttctccgttaattttgatctcggttattcgctggaggactctgaggatgaagtggaa
gttgcatcatctccgtcgcctaaaaaacaagccgagtcagttgtttctaattcctctact
cctcgtcgcagcttcgccggactcttcaaagagtcccagtcatcttcacaaattaaaacg
gattattggaggtctaaaactgaggaactcccatctccagtttcgttactgggacccaga
cagatgctcctgtctcgggttgcagaaccggactcttctaaaatgaatcaaaaacaagct
gaaggtgattcactgcaagaactgattcatgtgggagagtcttctcctcgtccagcagag
tgttgcagtgacagtgaagaggaagtcgtgcctctcaaaagaagacatcacaaggtcaac
cccttgtcctccccagacgtgtctaagagcctgagtgacgtggactcaccggtggtggca
aagaagaaacgttcttctgtactgaatacgactgacgaaagtcaaatcggagatttttcc
gatgatgatttccagaactgctccatcttggtgcggagaaaaacaacaactggagacaag
aggcaacaaatccagcagcccagcaacaagaaccgcagacgtcagaaagtgcgtcagttt
ctggatgaagaggcagagctgtcagaagatgaagagggagcggatgtttcgtctgatgag
gaggacggagccgatctgaatcggtccctggaaggcttcgttgtggacaacatgcacctt
tcccagggactgaacgactcagagatgcatggagtttacctgaagtctgtgagaagccct
gcagtccggggaaaattcaaaatgtcttataaaaaccatcaaaacatggagattttttct
caggtgccagagatggatgagacgtatgcagaggacagcttcgtggttggcagtgatgaa
gaagaggaggagagtaacgaggaagagcctgaagacgtcgaacttctgcccgacgtgtcg
ctcattgacgggagacggcagtacgcaaccagacggcgcattttcctgcacagagccaga
gcgggactcgaaaccaatgccagaactcagcccgctgcagagcaaacaaccagaaccaga
accaaacgctcgcgggtcgtctgcctgaacgagtccagcgaagaggagatggagggagtg
ggcaaaaatcagaaaacggtgtcctctgcttatgctagcgtagcatctaaagtctcatta
ttgagtaaagaacagagtgaagagcagaaaaatgaaagatgtcgtcaaaggttagagaat
caacatctgctctcggatgagctcgacttcgcagagcaagagccgactttcataacagga
cttccttccgcgtcctcagcggctcaggggtccgctcctcaggatccggtaccggcggtg
accaagccgccgccgcctctccccgggtcggtcagcatcctggtggatagccgctgcacc
ggcggcatggtggagctggtgatgagtctgcgtcagcgccacggggctgacgtccaagtc
tgcacgctggacagcaactacttcatcgtgagcaaccgcatggcggtgatgaggcagagc
caatcggatttggccgcgatgcagaaccggaagcgactggcggagagattgagcaacatg
caggggttgtttgagcgagtgtgtctgatagtggagaaagatcggtccaagcagggtgaa
gtttcccgccctttccagcgcacccgttactatgacaacactttagtgggcctggtccgg
gccggggttcgcctgctgtggagcgacggcgccgaggagagcgccgggttgttggcggac
ctggccaagctggagcgccgtaaaggtcacggcatcgcggtgcccctgaaggtcaaaggt
cagcgcagggagcaggcgctgcagatgtacctgagtctgccttcggtcagccatgttcac
gctctcaacctgctgcacaacttcagctgcgtcgcacagctgatgaacggctccgttgag
tcgatccagaaaggcggctgcatgagccgatccagagccgaggagatctaccgcttcctg
cgtcgctcctgtgactccgcccacttcaccaaaacacccaaagctggaaaaaacggctag
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