Gluconobacter albidus: A0U94_07270
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Entry
A0U94_07270 CDS
T04736
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gal
Gluconobacter albidus
Pathway
gal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0U94_07270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gal03400
]
A0U94_07270
Enzymes [BR:
gal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0U94_07270
DNA repair and recombination proteins [BR:
gal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0U94_07270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AQS92117
UniProt:
A0A1U9L299
LinkDB
All DBs
Position
complement(1622135..1625656)
Genome browser
AA seq
1173 aa
AA seq
DB search
MEQNETMTREMSTTSFDRSFGPTVWGVPDGSVAFLLRQRLAEHDGPLLHVARDDAAVAAL
ADMLAWLVPEVEVLRLPAWDCLPYDRVSPNPVLIAERAGTLCRLLEPTKARRIVLTTVHS
LIQRVPPRSAFRGQSISVKTGESLDQAMLIELLVANGYTRTDTVMEAGEFATRGGIFDLF
PAGESDPIRLDLFGDEVENIRAFDVGTQRSTETLKRFELRPVSEFSLGPDSISRFRTGWR
DSFGPAATSDTIYENVSDGRRYPGLEHYLPLFHDGDGHQMETLLDYLPSGAVSFDQHAPE
ILKARLDMITDHYQARRVPTREGEIPYRPLPPHRLYLDTHGWESMLADVPSVILNAFAMP
DTAQGVDAGYRPGPLFARAKDGSRAGMFEAFGQQVKTWAEAGRRTYVTAWSRGSRERISH
LLAEHGVTVTSYDDWPDAAGMPKGTTGLLTLGLERGFVSDRLCFVSEQDLLGERISRPPR
RRKRGEQFISQVGEIAEGDLVVHSDYGIGRYVGLETVVEGRVAHDYLSILYDGEQRLLLP
VENIELLSRFGSEQAGVQLDKLSGTAWQARKAKMKSRIRVMAGELIKTAAARAMKDAPML
APAEGLWDEFCARFPFVETEDQSRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAF
VAALSGMQVAVVVPTTLLARQHFRSFTARFEGFPVNVVQLSRLVTPKEATKVREGMANGT
VDIVVGTHALLAKTVAFERLGLLIIDEEQHFGVSHKERLKALREDVHVLTLSATPLPRTL
QLSLSGVREMSLIATPPTDRLAVRTFITPFDSVMIREAIQRERFRGGQVFCVVPRLADMD
RMAERLAEIVPDAKTVQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTI
IIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTRPLSASSEKRLEVMQTLDSLGAGF
TLASHDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVIDMRRERGKRLEEEDSWTPT
IILGLPVLIPETYVPDLPVRLGLYRRIASLTNEAEVEAMRAELVDRFGSLPPEVGNLLDV
VLIKRLCREAGVERLETGPKGMVIQFRRNRFGNPAALIDWVTRKKESGVKIRPDHKLAVI
REMTNATRIGYAKKVTTVLCKMIRKLEVQTSGD
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacgaaaccatgacccgtgaaatgtccacaacgtccttcgataggtctttc
gggccgactgtctggggcgtgcctgatggcagtgtggcctttcttctccgtcagcgcctt
gccgagcatgacggaccactgctgcatgttgcgcgcgatgacgctgccgtggccgcgctg
gccgacatgctggcctggctggtgccggaagtggaagtcctgcgcctcccggcctgggac
tgtctgccctatgaccgcgtttcgcccaatccggttctgattgccgaacgggccgggaca
ctgtgtcgtctgctagagcccaccaaggcacgtcgcattgtcctgacgaccgtgcacagc
ctgatccagcgcgtgcctccacgctcggcgttccgagggcagtccatcagcgtgaaaacg
ggcgagagcctcgatcaggcgatgcttatcgaactgctggtggccaatggctacacccgg
accgatacagtcatggaagcgggtgagttcgcgacacggggtggcattttcgatctgttc
ccggccggggaaagcgatccgatccggctggatctgttcggggatgaagtcgagaacatc
cgtgcgttcgacgtcggaacgcagcgctcaaccgaaacgctgaaacgcttcgaacttcgc
ccggtgtccgaattctcgctgggccccgacagcatcagtcgcttccgcaccggctggcgc
gattcgttcggcccggcggcgacatccgatacgatttacgagaacgtctcggacggtcgg
cggtatccggggctggagcattacctgccgctgttccatgacggtgacgggcaccagatg
gaaacgctgctggattatctgccgagcggggcggtcagcttcgatcaacacgcgccggag
atcctcaaggcccggctggatatgatcaccgatcattatcaggcccggcgtgttccgacg
cgtgaaggggaaatcccgtaccgtccgctgccgccacaccggctctatctggatacgcac
ggctgggaatcgatgctggcggatgtgccctctgtcatcctcaatgcgttcgccatgccg
gatacggcacagggcgtggatgcaggctatcggcctggcccgctctttgcacgggcaaag
gatggaagccgggcagggatgttcgaggcttttgggcagcaggtgaaaacctgggccgaa
gccggacgacggacttatgttacggcctggagccggggctcgcgggagcggatttcccat
ctgctggcggaacatggcgttacggtcacgtcctatgacgactggccagatgcggcggga
atgccgaaaggcacgaccggactgctgacgctggggctggagcgcgggttcgtctcggac
cgtctgtgcttcgtctccgaacaggaccttctgggcgagcggatttcgcgtccgccgcgc
cgccgcaagcgtggagagcagttcatctcgcaggtcggcgagattgcggaaggcgatctg
gtcgtgcattccgattacgggatcgggcggtatgtcgggctggagacggtcgtcgaaggc
cgggtcgcgcatgactatctgtcgatcctgtatgatggggagcagcgcctgcttctgccc
gtcgagaatatcgaacttctcagccgttttggttccgagcaggccggggttcagctcgac
aagctgagcggaactgcttggcaggcccgcaaagccaagatgaaatcccgcatccgcgtc
atggcgggcgagctgatcaagacggcagcagcccgagccatgaaggatgcgccaatgctc
gcgcccgccgaggggctgtgggacgagttctgcgcgcgcttcccgttcgtggaaacggag
gatcagtcccgcgcgattgccgacgttctggaagacatgagcgccgggcggccgatggat
cggctggtctgcggcgatgtgggtttcggcaagacggaagtcgccctgcgggcggcgttc
gtggccgccctttcgggaatgcaggttgcggtcgtggtgccgacgacgctgcttgcccgc
cagcatttccggagctttacggcacgtttcgagggctttcccgtcaatgtggtgcagctt
tcgcgtcttgtaacgcccaaggaagccacgaaggtgcgcgagggcatggcgaacggcacg
gtggatatcgttgtcggcacccatgcgctgctggccaagaccgtggcattcgagcgtctg
ggcctgctgatcatcgacgaagaacagcatttcggcgtctctcacaaggaacgcctcaaa
gcgctgcgggaggacgtgcatgtcctgacgctctccgccacgccgctgccaagaacgctt
cagctttcgctgtccggcgtgcgggaaatgagtctgatcgcgacgccgccgacggaccgt
ctggcggtccgcacattcatcacgccgtttgacagcgtcatgatccgcgaggcgatccag
cgcgaacgcttccgcggcggtcaggtcttctgtgtcgtgccgcgtttggcggatatggac
cggatggccgagcgtctggcggaaatcgtgccggacgccaagaccgttcaggcacatggt
cgcctgacgccgaccgaactcgaacgtgtcatgacggagttcgcggacgggaaatacgac
atcctgctctccaccaatattgtggaaagcgggctggacatgcccagcgtgaatacgatc
atcatccaccgtgcggacatgttcggtctggggcagctctaccagcttcgcggacgcgtg
ggccgtggcaagcagcgtggttacgcctaccttacctggccgcagacccgtccgctgtct
gcttcgtctgaaaaacggcttgaggtcatgcagacgctggactcgcttggggcgggcttc
acgctggcctctcacgatctggatctgcgcggcgcgggcaacctgctgggggatgagcag
tccgggcatatcaaggaagtcgggatcgaactctaccagcagatgctggaagacgccgta
atcgacatgcgtcgcgagcgcggcaagcgtctggaggaagaggacagctggaccccgacc
atcattctgggcctgccggtgctgatccccgaaacctatgtgccggacctgccggtgcgt
ctggggctgtatcgccggattgcgtcgctgacgaacgaggccgaggtcgaggcgatgcgc
gcggaactggtggaccgtttcggatcgcttccgccggaagtgggaaatctgctcgatgtg
gtcctgatcaagcgcctgtgtcgcgaggccggagtagagcgtctggaaaccgggccgaag
ggcatggtgatccagttccgccgcaaccggttcggcaaccccgccgcgctgatagactgg
gtaacgcgcaagaaggaatcgggcgtaaagatccgccccgatcacaagcttgcggtcatc
cgtgaaatgacgaatgcgacgcgtattggctacgccaagaaggtcacgaccgtcctatgc
aaaatgatccgcaagcttgaggtccagacatcaggggactga
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