Glutamicibacter halophytocola: AOZ07_04440
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Entry
AOZ07_04440 CDS
T04229
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gar
Glutamicibacter halophytocola
Pathway
gar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOZ07_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gar03400
]
AOZ07_04440
Enzymes [BR:
gar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOZ07_04440
DNA repair and recombination proteins [BR:
gar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOZ07_04440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALG28317
LinkDB
All DBs
Position
947343..950954
Genome browser
AA seq
1203 aa
AA seq
DB search
MSLNGLHDFLREEPSFRRIQHSAANGFSTRSEDLEIAAPQGMRAILSAHISQALHESNHS
GVTLIVTATGREAEEVSSSLSAYVPAEQIAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HQRDESLSVVIAPIRAVLQPLVAGLGELRPVALELDDEPGFDQVIKDLAAAAYARVDMVT
HRGEFAVRGGIIDVFPPTLDHPVRIDFFGDQIDSMRYFAIADQRSTDDAGPQKIIATPCR
EMLITPQVMSRAANLKNHFPAAEEMLTKIAGGIAVEGMESLAPLLVDKMVPLLSLLPESS
IALIMEPERVRARAQDLNATNAEFLAAAWASASDGASAPLDLNTANSERKLATGDFASLA
ETLNHAKAAKVSWWALTAMGADEELDLGASTIRIPAREPHGYQGDIEAMMEFIAGRVKDQ
WRFVVATEGPGPAQRLAELFAEFSIPAHRVENIAQAPTPGLIEITQATAGRGFVFEELKL
GLLTEADLLGRSSAYPNRKGRKLTVKRKRNAVDPLSLQAGDYIVHEQHGIGKFVELMARK
VNGSGKDAKREYLVVEYASSKRGAPGDRLFVPMDQLHMVTRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFGQDTPWQHELEEAFAFIETPDQLTAINEV
KSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSRQVAVLVPTTLLASQHYQTFTER
YSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKNVEFKNLGLVIVDEEQ
RFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIDRVAAELRELVPEARVEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDVEKPLGEVALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIASAETTE
ALAEVREELVDRYGKLPQPVENLMRVAALRIRARAVGLHDIQQIGNNIKLSPAKIEDLPA
SRQVRLERLYPGAANKPALNSIFLPKPKTSPIGGRDLADEEILEWAEKLLYAIFEPTPAP
ATA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaatggacttcatgacttcctgcgcgaggagccatccttccgccgcatccag
cacagtgcagccaatggcttctccacgcgaagcgaagacctggagatcgcggccccgcag
ggcatgcgcgctatcctctcggcccatatcagccaggcactgcacgagagcaatcactct
ggggtgacgctcattgtcaccgcgaccggacgcgaagcagaagaagtgtccagttcgctc
agcgcctatgtccctgcagagcagattgccgaattcccatcgtgggaaaccctgccgcac
gaacgcctctcgccgcgcagcgacaccgtggggcgccggctggaggtgctgcgcaggctg
catcagcgggatgaaagcctcagcgtagtgatcgcgccaatccgcgccgtgctccagccg
ctggttgccggcctgggagaactgcgcccggtcgccttggagctcgacgacgaaccaggt
ttcgaccaggtcatcaaggatttggccgctgccgcctacgcccgtgtcgacatggtgacc
caccgaggcgaattcgcggtccgcggcggcatcatcgatgtcttcccgccaacccttgac
cacccggtgcgcatcgatttcttcggcgaccagatcgattccatgcgctacttcgccatc
gccgaccagcgctccaccgatgacgcagggccgcagaaaatcattgccaccccctgccgt
gaaatgctgatcactccacaggtgatgagccgggcagccaatttgaagaaccatttcccc
gccgccgaggaaatgctcaccaaaattgccggcggcatcgctgtagaaggcatggaatcg
ctggcaccgctgctggtggacaagatggttcccctgctctcgcttttgccagagtcgtcc
atcgccctgatcatggagcctgaaagggttcgcgcccgcgcccaggacctcaacgccacc
aacgcggaattcctggcagccgcctgggcctccgcttctgacggcgccagcgcgccactg
gatctgaacaccgccaactccgagcgcaagctcgccaccggcgactttgcgtcactggca
gaaaccctgaaccacgccaaggcagccaaggtgtcctggtgggcactgacggccatgggc
gcggatgaagaactcgatcttggcgcttcgaccattcgcatcccggcccgcgaaccccac
ggctaccagggtgatatcgaagcgatgatggaattcatcgcaggacgagtcaaggaccaa
tggcgcttcgtggtggctaccgagggtccaggcccggcacagcgccttgctgaattgttc
gcagagttcagcatcccggcccatcgcgtggagaatatcgcccaggcgccaaccccgggc
ctgattgagatcacccaggcaaccgccggacgcgggttcgttttcgaagagctcaaactc
ggattgctgaccgaggccgacctgctggggcgttccagcgcctacccgaatcgcaagggc
cgcaagctcaccgtcaagcgaaagcgcaatgcagtggacccgctgagcctgcaagccggg
gactacatcgtccacgagcagcacggcatcggcaagttcgtggagctgatggcgcgcaag
gtcaacggttcaggcaaggacgccaagcgcgaataccttgtggtggaatacgcgtcttcc
aagcgcggggcgccgggggaccggctctttgtgccgatggaccagttgcacatggtcacc
cgctatgtcggcggcgaagccccgaccctgtccaagatgggtggctcggattgggccagc
accaagtccaaggcccgcaaagcggtcaaggaaatcgctggcgacctgatcaagctgtac
tcggcgcgcatggccagccgcggccatgccttcgggcaggacaccccatggcagcatgag
ctggaagaggccttcgccttcatcgagaccccggatcagctcaccgccatcaacgaggtg
aagtccgacatggagaaggaaatcccgatggaccggctgatttccggcgacgtgggcttt
ggcaaaaccgaaattgcggtgcgtgctgccttcaaggcggtgcaggattcccgccaggtc
gcagtattggtgcccaccacgttgctcgcttcccagcactaccagacgttcaccgaacgc
tattccggcttcccggtgcgcgtgaaaaccctctcgcgtttccagaccgccaaggaatcc
aaggaaatcctggccgggctgaaggatggcagcgtggatatcgtcatcggcacgcaccgg
ctcttgtccaaaaatgtcgagttcaagaacttgggcctggtgatagtcgacgaggaacag
cgctttggcgtcgagcacaaggaagagctcaagaagatgcgcaccaatgtggatgtgctg
gccatgagcgccaccccgatcccgcgtaccttggaaatgtcattgactggcatccgcgag
acctccaccttggcaacgcctccggaagaacgccatccagtgctcacctatgtgggtcca
cgcagcgacaagcagatctccgctgccatcaagcgcgagctcatgcgcgatggacaggtg
ttctttgtgcacaaccgcgtgagctccatcgaccgggtggccgccgaacttcgcgagctt
gtccctgaagcacgcgtggaagtggcccacggcaagatgagcgaatcgcggctggagcgg
atcatccaggacttctgggagaagaagttcgacgtcctggtctccaccaccatcatcgaa
accggcctggatatttccaacgccaacacgctgatcgtggaccgggccaacaactacggc
ctctctcagcttcaccagctgcgtggacgcgtgggccgaggccgcgaacgcgcctatgcg
tacttcctctgggatgtcgagaagccgctgggcgaagtggccctggagcggctgaaagcc
gtcgcagcgcacaacgagctcggctccggctatcagctggcgatgaaggacctggaactg
cgtggcgcgggcaacctgctcggcggcgagcagtccgggcacatagccggtgtgggcttc
gacctgtacctgcggcttgtgggcgaagccgtggccgactacaagggcgagggcgaagag
gaagccaccgagatgaagatcgacctgccggtcaatgcccacctgccgcacgactatgtg
cccggcgaacggctgcgcctggaggcctaccgcaatatcgcctcggcggaaaccaccgag
gcgctcgccgaagtgcgggaggaactggtggaccgctatggcaagttgccgcagccggtg
gagaacctcatgcgggttgccgcgctgcgtattcgcgcacgcgccgtagggctgcacgat
atccagcagatcggcaacaatatcaagctgtcgccagcgaagatcgaggaccttccggca
tcacgccaggtgcgcctggaacggctgtaccctggtgctgcaaacaagccggcgctgaat
tcgatcttcctgcccaagcccaagacctcgccgattggcggccgcgacttggcggatgaa
gagatcctcgaatgggctgaaaagctgctctacgcgatctttgagccgacccctgctccg
gcaactgcctag
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