Gasterosteus aculeatus (three-spined stickleback): 120810076
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Entry
120810076 CDS
T07457
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gat00535
]
120810076 (col14a1a)
Proteoglycans [BR:
gat00535
]
Extracellular matrix (ECM) proteoglycans
Others
120810076 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
Mid1
nSTAND2
Motif
Other DBs
NCBI-GeneID:
120810076
NCBI-ProteinID:
XP_040020233
LinkDB
All DBs
Position
XX:11500043..11584338
Genome browser
AA seq
1862 aa
AA seq
DB search
MVSAGQIRWCSWTPLVLLVLISHLAQGQVPAPRRLRFKVLSPSKLLISWKEPKGDFDSYL
FLYNTTPGGQQREIIISKSDTKVLITDYSPMKDYTVSVLSVSGGEQSRPLQGRHKAEGGE
SDGGDETKPERLTESAGPPEDDNEIFGVDQFVCHTEAIADIVILVDGSWSIGRLNFRLVR
MFLENLVDAFDVGINKTRIGLAQYSGDPRIEWHLNAFSTKDAVIDAVKNLPYKGGNTLTG
LALTYVLENCFKPESGSRPGVPKIGILVTDGKSQDDVIPPAESLRNAGIELFAIGVKNAD
ENELVSIASEPDHTHVYNVADFNVMSSIVEGLTKTVCEQVEQQENDIKQKYIPEKTGAPL
ELVTSEVTARGFRVSWSHAPGNVEKYRVLYYPDGEGEPQEAVVDGGETSAVLQHLHSLTE
YQLAVFAVYANESSEALRGSETTLGLPAVTTLQLSDVTHSTMRARWNSVEGVSGYMLLYA
PLTDDVDSVEKEVKVLDAVTEMELHGLTPRTEYTVTVYAMYGEEASDPMTNQKSTLPLSP
PSNLQFSDITHNSAHISWAPVPRGVKGYRIVWIKTDGAVTEEVEVGPDTSYDLSGLTSLM
EYSVAIFALYKEGQSEALTDRFTTTPVPGPLDLRSSNVGTDGFQVSWDHSADDIVLYRLS
WAPFTGGDTKEVVLSGIDNQYTLTGLSPSTEYEAMLTAVFKDESESDTVSVTETTLAETT
TIATTTQAARRAVRNLRLRDETTQSMEASWELQDPHVQSYRVSYAGLRGNRREESVLVSG
VQMRAVLQPLLPDTQYKVTVTPVYTNGRDGISVSALGFTLPLLSPANLRVSEEWYNRFRV
TWDPPPSPTAGYRIVYQPINVPGPFLETTVGDDVNSMLLLNLLSGTEYNVQVTASYPTGQ
SEPLLVNAKTLFLGVSGMSTYQVRPNSLCVQWQPLLRATLYRVSIQSTLNGQRQEVSLGG
GASRQCFYDLTPSSQYQISIHTQMQQMEGPPVSITDMTLPPPTQTPTEPPTTEPPPTIPP
AKEVCREAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQVAIAQFSDDA
RTEFQLSSHGNKEALLDAIQRIRYKGGNTKTGRAIKHVKESIFTPEAGARRGVPKVLVVL
TDGRSQDDVNKVSKEMQVDGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLDAVKKI
EEQLITFVCEAATATCPSVLMSGNTMAGFHMMEKFGLVEKEYSTIAGVSLEPGSFNSFPC
YRLHRDALVSQPTKYLHPEGLPSDYTISMMLRLLPETPEEPFALWEILNGNDEPLVGLIL
DNSGKTLTFFNHDYKGHFQTVTFEGTEIKKLFHGSFHKLHVTISKTSVKVVLDCSVVGEK
SVSAAGNITTDGVEILGRMIQSRGRRDNSAAFQLQMFDIICSTSWASRDKCCELPALRVE
EQCPSMPHACTCSQESKGPPGPSGPPGGPGIRGARGDRGESGVTGPQGPVGKIGPSGPSG
PPGPQGPSGLSIQGPPGAAGGKGARGEIGPAGQMGVPGSSGSPGRDGPPGARGLPGNSGP
QGRQGPPGPLGSPGAPGAHGPVGSAGTQGDQGLPGPSGTKGDKGERGDVQSQAAVHAIAR
QVCEQLIQSHLSRYNSILNQIPAQAATSVRTVPGPPGEPGRRGSPGPQGEPGPAGRPGFP
GASGQNGLPGERGLLGDKGERGSPGIGSQGPRGQSGPPGLPGEGRTGSQGPPGRPGNTGT
PGRTGNPGAPGAAGPPGYCDQNSCLGYNVGVQPLPHAGVQPHNQPHNPAAEAYDHGGEDE
EEEEEEEEEQDPYYRGYPRQYYPQQPSQLAHRHNGYHSSPTHSEDTEVRSPGIARFPRGA
VV
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcagcggggcagattaggtggtgctcgtggaccccactggtgttactggtcctg
atttcccatttggcgcagggtcaagttccagctccaaggaggctgcgtttcaaagtgctg
agcccaagcaaactccttatttcatggaaggagcccaaaggagactttgacagctatctg
ttcctttacaacactacgccaggtggtcaacagagggagatcataatatctaaatctgac
actaaggtgttgataacagattacagccccatgaaggactacacagtcagtgtcctcagc
gtcagtggcggtgagcagagccggccacttcagggccgacacaaagctgaaggaggcgag
agtgacggaggagacgagactaagcccgagaggctgactgagtcagctggacctcctgag
gatgacaacgagatctttggagttgatcagtttgtttgccacactgaggccattgcagac
atcgtgatcctggtggacgggtcctggagtatcggtcggctcaacttccggctggtccgc
atgttcctggaaaatctggttgatgcctttgatgttggcatcaataagacacggattggt
ctggctcagtacagtggtgatccccggatagagtggcatctaaatgctttctccacgaaa
gatgccgtcattgatgctgttaagaacctgccatacaaaggaggaaacactctcacagga
cttgcgttgacctacgtcttggagaactgcttcaagccggagtctggctctcggccgggc
gtgcccaagatcgggatcctcgtcacagacggaaagtcccaggacgatgtcattcctccc
gcagagagtttacgaaatgctgggattgagctctttgctattggtgttaagaatgctgat
gagaatgagctggtctccattgcctcggagccggaccacacacacgtctacaacgtggcc
gacttcaacgtcatgagttccattgtggagggtttgaccaagactgtgtgcgagcaagtg
gagcagcaggaaaacgatatcaaacagaaatatataccagagaagacaggagcgccgctt
gagctggtgacatcagaagtgacggctcgcggcttcagggtttcatggagccacgcgccc
gggaatgtagagaagtacagagtgctttattatcctgatggcgaaggagaaccacaggag
gcggtggtggacggtggtgagacttcggcggtgttacagcatctccactctctcactgag
taccagctggctgtgtttgctgtgtacgcaaacgagtcaagcgaagctctcagaggatca
gaaacaaccctgggcctccccgcagtgacgaccctccagctgtcagatgtgactcacagc
accatgagagcaagatggaacagtgtggagggagtttctggctacatgctgctgtatgca
ccgcttacagatgatgtggactcagtcgagaaagaggtcaaagtgctggacgcagtgaca
gagatggagctccatggattgacccctcgcactgaatacaccgtcactgtttatgccatg
tacggggaggaagctagtgacccaatgacaaaccagaaatctacattaccactgagtccc
cccagtaacctccagttctctgacatcactcacaactccgcccacatcagctgggcaccc
gtacccagaggagtcaaaggttatcgaatcgtgtggatcaagacagacggagcggtcact
gaggaggtggaggtgggtccagacacctcgtatgacctcagtggattgacgtctctgatg
gagtactcggtggccatctttgccctgtacaaggaaggccaatcggaggcactcacagac
cggttcactaccactccagttccaggtccattggatctacgctccagcaatgtcggcaca
gacggcttccaggtcagctgggatcactcagccgatgacatcgtcctctacagactctcc
tgggcaccgtttacgggtggcgacacaaaggaggttgtcctgagtggaattgacaaccaa
tacacgctgactggtctgagtccgtcgactgagtacgaagcgatgctgacggctgtattc
aaagatgaatccgaaagtgataccgtctctgttaccgagaccaccctggccgagacaaca
acgattgctaccacaacacaagcggcacgtcgggcagtgagaaaccttcggctgcgtgac
gagaccacgcagagcatggaggcgtcatgggagctgcaggacccccacgtgcaaagctac
agggtctcttacgccggtctcaggggcaaccgccgggaggagtctgtgttagtttctggt
gttcagatgagagcagttcttcagcctttgctaccagacacccagtacaaagtgacagtc
acaccggtgtacacgaatggacgagacggcatcagtgtctccgcgctcgggttcacattg
cctctcctgtctcctgcaaacctacgtgtgtcagaggagtggtacaatcgcttcagggtc
acctgggatccacctccgtcgccgacagctggttacaggatcgtataccagcccatcaat
gtcccaggaccatttttggagacaacggttggtgacgatgtgaactccatgctgcttctg
aatctactaagtgggacggagtacaatgttcaagtgacggcttcctaccccacaggacag
agtgaaccactgctggtgaatgccaagacattgttcctcggtgtgtctggtatgtccacc
taccaggtgcgtcccaacagcctctgcgtccaatggcagccactcctccgtgccaccttg
tacagagtctccatacagtctacgctcaacggtcagagacaggaagtgagcctgggaggt
ggtgcttcccgacagtgcttctatgacctcacgcccagcagccaataccagatcagcatt
cacacccagatgcagcaaatggaaggacctcctgtctccatcactgacatgacactgcca
ccgcccactcaaactccgactgagccccccaccacagagcccccgcccacgatcccccca
gcgaaagaagtgtgcagggaggccaaggccgacctggctttcctggtcgatggttcgtgg
tccattggagacgataacttcatgaagatcacgcgttttctctacagcaccatgggatca
ctggatctgattggcccagacggtactcaggtggccatcgctcagttcagcgacgatgct
cggacagaattccagctgagttcccatggcaacaaagaagcgctgttggacgctatccag
aggatccgatacaagggtggaaacacaaagacaggtcgggccatcaaacatgtgaaggag
tctatttttacaccggaggccggtgcaagacggggcgtccctaaagtcctggttgtcctc
actgacggacgttcccaagatgatgtcaacaaagtgtcgaaggagatgcaggtggacgga
tatatcatcttcgccattggctttgcggacgctgactacggggagctggtgaatattgcc
agcaagcccagtgatagacacgtcttctttgtggacgatttggacgccgtgaagaaaata
gaagaacagctcattacttttgtctgtgaggccgccaccgccacttgtccatcggttttg
atgagtggtaacacaatggcgggtttccacatgatggagaagtttggcctagtggagaag
gagtacagcaccatagccggagtttctctggagccgggttcatttaacagcttcccgtgt
tacaggttacaccgggacgccctggtgtcgcagcccaccaagtaccttcatccagaaggt
ttaccatctgactacaccatttctatgatgctccgactgcttcctgagaccccggaggag
ccctttgcattgtgggaaatcctcaacggcaacgacgagccattggtcggacttatcctg
gacaactctggaaagaccttaaccttcttcaaccacgactacaaaggacactttcagact
gtcacttttgaaggaactgaaataaaaaaactcttccacggcagcttccacaagctccat
gtaaccataagcaagacgtctgtgaaggtggtgttagattgttctgtggttggggagaaa
tcggtcagtgctgctggtaacatcactacggatggagtggagatcctcggaaggatgatt
cagtccagaggcagacgggacaactctgctgcattccagctccagatgtttgatatcatc
tgcagcacatcctgggccagcagagataagtgctgcgagctgccggcattaagagttgag
gagcagtgtccctccatgccgcatgcctgcacctgttcccaggagagcaaaggacctcca
ggaccttccggaccccctggcggtccaggcatacggggagccagaggagatcgaggagag
tcaggagtgacgggacctcagggaccagtgggaaagatcggtccttctggaccctcaggg
ccgcctggtcctcagggacccagtggtctctctattcagggacccccgggtgctgcgggg
gggaagggagcgcgaggagagatcggtccagccgggcaaatgggcgttcctggaagctcg
ggctcccccgggagagacggccccccgggggcaaggggtctgccgggtaatagtggacca
cagggaagacaagggcctcctggacctcttggatccccaggagcacccggagctcatgga
cctgtcggttcagcaggaactcaaggagatcaaggacttcctggtccttctggtaccaaa
ggtgataagggagaaagaggtgacgtgcaatcccaagctgctgtgcatgccattgctcgg
caagtgtgcgagcagctcatccagagccacttgtctcgctataactccatactgaaccag
atccccgcccaggcagcaacgtcagtccgaacagtaccaggaccacccggggagccgggg
aggagaggctccccgggcccccagggagagccagggccagccggcaggccgggcttcccc
ggcgccagcggccagaacgggcttccgggagagagaggtcttttgggtgacaagggagaa
agagggagtccaggaattggaagtcagggaccccgaggacaatccggacctccaggcctg
ccgggtgaaggacggacaggcagccagggcccccccgggcggcccggtaatactggaaca
ccgggcaggacggggaacccaggtgcccccggggccgccggcccgccagggtactgtgac
cagaactcctgtctgggctacaacgtcggagtccaaccccttcctcacgccggcgtgcag
ccccacaatcagccgcacaaccctgctgcagaggcttacgaccatggaggagaggatgag
gaggaggaggaggaggaggaagaagagcaggacccctattaccggggttacccccgtcag
tactacccccaacaaccctcccaactggctcacaggcacaacggttaccactcaagcccc
acccactccgaggacacggaggtgaggtcgccgggcatcgccaggtttccccgtggcgca
gtcgtgtga
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