Gasterosteus aculeatus (three-spined stickleback): 120822235
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Entry
120822235 CDS
T07457
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120822235 (frem1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
120822235
NCBI-ProteinID:
XP_040037673
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Position
VII:complement(11641734..11679172)
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AA seq
2179 aa
AA seq
DB search
MGSHGQALVGLLLLLLLLLVITCSSHSSLVKVNNGVKVKRGQSVYLQEGDLQFHIPRQKD
ACKVEVVLNEPITQRVGKVLPQVFDCHYRTDEVKYIHNGCPLLNEDTVELRLYRFTETET
YMESFFLHVDIMEPECSIIKLGPKSLKVREFYGFSDAVDGNVVSFHYEERSSLECSIHLS
RHDTHLPAHGQLVTGEPEKAVKRGDEPESFIHLRQQLDNKATAMCKSEDCLKGLKLMKST
KIPCDDFLLMGLKYQHIDPPSPDIDYIAIKLDLKDTRSGSTYQSEQAWIPVHIVGALPNQ
PPKPSFMSMFILEVDQFILTPLSTAILDTEDEETPKQLLVFNITKPPMNGFITHLSDHTR
PISSFTWLDLNEMLIGYQPPNSSNTQRRNYEMEFEVHDFFFEKSPPMTVHMSVRNADTNA
PRVSWNMGLSLLEGQSRPINWEQLQIVDNDNPNAVRIITVDGLQHGRLTVRGGKSFMFTV
NDIKAGVVRYHHDDSDSTKDYIIFRITDGHHQTRHKFPIKILPKDDSPPVLITNMLLEVS
EGQMALLRGSTLQASDMDSSDDYILFNITRPPRGGEVIKIPTSGHTGYRVSHFLQRDLSQ
SMVYYRHQENKVFDDSFEVVLSDFHDPPNLSEPQVVVVHIEPAPDQPPKEVPGSSRCLVI
KETEVVHITRQQLHFTDQECPDSELTYTVTTPPFYAGPHSRPDAGRLFLVDSIPKFNKDP
NAPVLRLFTQHAVNFMKIAYMPPVTDIGPYPQYIQFVLSVTNLLGKTVSGICFNITVVPV
DNQPPQVITNPPTVDEGGHCWLGPEHLLVSDVDSVESKLQVALQRKPQHGALQFGDLPLK
PGQAFAVKDLKSLKVRYNHDGSETVEDHIEFTATDGSNSVHFVLQVKVLPINDEVPVLVD
GLKSVLSCAEGQEIVITSDYILAADADSNSSSLTFLIARQPHHGIVCRNSIEVDRFIQAD
ITARIITYKHTGLEIGLTPRHDTITFVISDGETENSASCCSEENPTQTRDKTLMRKSLPV
YDLQITVFPVDNQPPSLITENIFTVDEGGSAPITASHLKASDLDTVLDKLVFSLISPPQF
GYIENVLPSPGFEKSNTGISIASFSYKDIIDGHVNYVQSRHQRMEPTADQFMLCVSDGKH
SSAHIPFYIIINPTNDEIPQFVAQNITVREGEMKQLDSSVLHAVDLDVPMDSLLFSVVKG
PQHGSIVIHGSEKSANKRREGSRVVDFTMTDLSHGIDLMYMHDDSENEEDSFTIQVTDGR
HRLQRKLMVKVLPVNDEEPHVIRNNGLEVERGEGRLISSVALFAQDGDTPSSRVMYILDS
TPTQGLLQLKEGLDWRTLSVARNCTQEMVDMNLLRYVNTHLHSAKTQDFFVFYLSDGKNQ
SPPQHFYISVKDVEKGNIAMFVKTANVSRGDRVVLTTDVLLATDSTETPEELLYVITKPP
AHGHVEYIKHPGLAITTFSQMDIAANLVAYLHDKRATTPTETFQFVVSNGKNSRNGSFEI
AVEMVDRILPSLSSNTGLSVPQGSSMVLGPDCLVMSDPDTPPSALTFVLLQPPQYGRLLL
DGSRLTVGSNFTQRHIDKLEVTYEHDGGASQIDRFAFTAADSTKRGMLLDGQLYTEPVFF
TIQIKPLDRSCPEVVKLLPLWQAEPLGDGRHGILVSSRELKAQDSDSKEEELIFCIVRQP
YFGYLEHMTTGGFVSQRFTQIELDRRTIAYIINSDRKSLSDSLEFTVSDPLGNTGPSHLL
EFSWSSVELSQPEYSVCEEQGAFSLDIIRRGNLAESSYVTIKVKEGTASAGKDFLISHSS
LIQFGPGVSKRSWQIQIIQDQLEEAVEKFEVLLVSPESTVIGSIDKAPVIIRDSGSVLLH
TTGQTKLNQDQAKEVSSDTYNIQHGSIQLEKLPLGTESVIWSRGDSRLGAHVPKNKLKLM
GNPKSIAPSSVFHNGTDIVYTYHGIMQMQVEDNTSPLRKERKANIHVVSRGAQQPVPAVL
TESKSGHHRKISKPEKTALAKGHAKASIPKPCVPQLMGLLHFHQTTNQLFHCDGVSWKPW
APTDEIVSAQMCPPGWTFHDGYCHYLSTEQKVAWSTANRVCRERYKGTLVSVLSNVKMDW
LWDFSGRKPFWIGLNDRDGRGRWEWAGGEPVSYTNWRKTPSRSKMKGNKRCVQVWRRAKW
QVRDCKRSIGHRFVCSIKT
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgggctcacatggtcaagcactggtcgggcttctgctgcttctgctgcttctgctggta
ataacctgctcatcacacagttccctcgtaaaagtcaataatggtgtaaaggtgaaacgg
ggtcagtcagtctaccttcaggaaggtgacctgcagttccatattccccgtcagaaggac
gcttgcaaggtggaggtggtgttaaatgaacccataactcaacgagtgggtaaagtcttg
cctcaggtatttgattgccactatcggactgatgaggtaaagtacatccacaacggatgt
ccattattaaatgaggacactgtcgagcttcgactatacaggttcacagagacagagaca
tacatggagagtttttttctccatgtggacattatggaacctgaatgcagcataataaag
ctgggacccaaatccctgaaggttcgtgaattctacggcttctcggatgccgtggatggc
aatgtggtgtccttccattatgaggagagatctagtctggagtgtagtatccatttgagt
aggcatgacacccacctgcccgcccatggccagctggtcaccggagagccagagaaagct
gtgaaaagaggggacgagccagagagcttcatccacctacgccaacagcttgataataaa
gccacggcaatgtgtaaatctgaagactgcctgaaaggtctgaagctaatgaagtccacc
aaaattccttgtgatgacttccttttgatggggctaaagtatcagcacatagaccctcca
tctccagacatagactacatcgcaatcaaactggatctcaaggatactcggagtggcagc
acatatcagtctgaacaggcctggattccagttcatattgttggtgctttgcccaaccaa
ccccccaaaccgtcctttatgtccatgtttatccttgaagtggaccagttcatcctcact
ccactctccactgcaatactagacactgaagacgaagaaactcccaaacaacttttggtt
ttcaacatcaccaaaccacctatgaatggcttcatcacccatctctccgatcatacccgt
ccaatttcctcctttacatggcttgatctcaatgaaatgctcattgggtatcaacctccg
aactcatcaaacacccaacgcaggaattacgagatggaatttgaggttcatgattttttc
tttgagaagagcccaccaatgactgttcacatgtctgtaaggaatgcagacaccaatgca
ccgagagtgtcttggaacatgggcctcagtctgttggagggtcagtctcggccaataaat
tgggagcagctacagattgtggacaacgacaacccgaatgctgttcgcatcatcacagtg
gacggcctgcagcatggacggctcactgtcagagggggaaagagctttatgttcactgtc
aatgacatcaaagcgggcgttgttcgctatcaccacgacgacagtgactccaccaaagac
tacatcatcttccgcattactgacggccaccatcagacacgacacaagttccccatcaag
atcctgccgaaggacgacagccctccggtcctcatcaccaacatgctgctggaggtgtct
gagggccagatggctttactgagaggctccaccctccaagcttcagacatggactcgagc
gacgactacatcctctttaacatcacccgacccccacgaggaggggaggtcataaaaatt
ccaacgtcaggacatacaggttatcgtgtcagccattttctgcagagggacctctcccag
tccatggtttactatcgacaccaagaaaacaaagtgtttgacgactcctttgaagtggtg
ctgtctgatttccatgacccccccaacctgtcagagccccaagttgtggtggtgcacata
gagcctgctccagaccaaccacctaaagaggttcctggttctagtcggtgtcttgtgatc
aaagaaacagaagtggtccacataacacgccaacagcttcacttcacagaccaggagtgt
ccagacagtgagcttacatatactgttacgactcctcctttttatgctggtcctcacagc
aggccagatgccgggaggttgttcttagttgacagcatccctaaattcaacaaagacccc
aatgcaccggtgctgaggctctttacacagcatgcagtgaacttcatgaaaatagcctac
atgcctccagtcacagacatcggcccttacccccagtacatccagtttgttctctctgta
accaacctcctgggcaaaacagtctctgggatctgctttaacatcactgtggtgccagtg
gacaaccagccgccgcaggttattaccaaccctccaaccgtagatgaaggagggcattgc
tggcttggccctgagcacttgctggtatcagacgtggactccgtagaaagcaagctgcag
gtggcacttcagcggaaaccgcagcatggagctctgcagtttggcgatctcccgctgaaa
ccaggccaggctttcgctgtgaaggacctgaaaagcctcaaagttaggtacaatcacgac
ggctcagaaactgtagaggaccacattgaattcacagcaacagatggctccaattcagtc
cattttgtcctgcaagtgaaggtgttgcccatcaatgacgaggtcccagtgttggtggat
ggtttgaaatcggtgctcagctgtgcagaaggacaggaaatcgtcatcacatcagactac
atcttagctgctgacgcagacagcaacagcagtagcctgacctttctgatcgcccggcag
ccacatcatggcatagtttgtcgaaactccatcgaggttgatcgcttcatccaggcagac
attactgcaaggatcataacctacaaacacacaggactggagattggacttactcctcgc
catgacaccatcacctttgttatatctgatggagaaacagaaaactctgcttcatgctgc
agtgaagaaaatcccacccagaccagagacaagacgctgatgcgaaagagtcttccggtt
tatgacctccagatcactgtgtttccagttgataaccaaccaccttctctaataacagaa
aacatctttacagtggatgaaggtggctctgccccgataactgcatctcatttgaaggcc
tctgacctggacacagttctggacaaactggtgttcagtctcatttcaccgccccagttt
ggctacattgaaaatgtcctgccaagtccagggtttgaaaaaagtaacacaggcataagc
atagcttccttttcatacaaagacataattgatggccatgtgaactacgtacagtccaga
caccagaggatggagcctacagctgaccagttcatgctctgtgtatcagacggtaaacac
agttctgcccatatccccttctacattatcataaacccaacgaacgacgagatcccacag
tttgtggctcagaacataacagtgcgagaaggagaaatgaagcagctggactcctcagtt
ttacatgcggtggatctggatgtccccatggacagcttgctcttcagtgtggtcaaaggc
ccgcagcacggcagcatcgtcatccacggcagtgaaaagtcagccaacaagagacgagag
ggcagccgtgtggtggacttcacaatgacagatctctcacatggtatcgatctgatgtac
atgcacgatgactcagagaatgaggaggacagtttcaccattcaggtgactgatggcagg
caccgactccaaagaaaattgatggttaaagtgctgccagtcaacgatgaagagcctcac
gtcatcaggaacaatggcctggaggtggaacgcggagaaggcaggcttatttccagcgtt
gctctgtttgcacaggacggtgacactccttcttcacgcgtcatgtacatattggacagt
acacccacccaaggactacttcagctaaaggaaggtctggactggaggacactgtcagtg
gcgaggaactgtacccaggaaatggtggacatgaacctcctgcgctatgtgaacacacac
ctgcacagtgctaaaacacaagacttctttgtcttctacttgtcagatggaaagaatcaa
tctcccccacagcacttctacatctctgtcaaagatgtggaaaaaggaaacattgccatg
tttgtgaagacggcgaacgtcagccgcggagaccgtgtggttctcacaacggacgtgctg
ttggccacagacagcacagaaacgccagaggagcttctatatgtcattactaagcctccg
gctcacggacacgtagagtacatcaagcatcctggactggcaatcactaccttcagtcag
atggacatagcagccaaccttgtggcttacttacacgacaagcgagccaccacacccaca
gaaacctttcagtttgttgtgagtaatggtaaaaacagtcgaaacggaagctttgagatc
gcagttgaaatggtggaccgcatcctgccatctctctcctcaaacacaggcctctcagtt
ccacaaggctcctccatggttctgggtcctgactgcctcgtcatgtctgaccccgacact
ccacccagcgcccttacctttgtcctccttcagcctccacagtatggcaggctgctttta
gacggtagcagactaactgttggctccaactttacccagcgacacatagacaaactggag
gtaacttatgaacatgatggaggggcgtcgcagattgaccgattcgcctttaccgctgct
gacagcaccaaacggggtatgctgctggacgggcagctatacacagaaccggtgttcttc
acaatccaaatcaagcctttggataggtcatgtccagaggttgtgaagctgcttcctctt
tggcaagcagagcctctcggagacggtcgacacggtatcttggtttcatctcgagagcta
aaggcccaagacagcgatagcaaagaagaggagctgatattctgcattgttcgacagccc
tactttggttacctagaacacatgactacaggtggttttgtatcacagcgcttcactcag
atagagctggacaggagaactatcgcctacatcatcaactcagacaggaagtctctctca
gacagcctggagttcacagtgtcggaccctctaggcaacacagggccttctcaccttctt
gagttcagctggtccagcgtggagctgtcgcagcctgagtactctgtgtgtgaagagcag
ggagccttctcacttgacatcatccgaagaggaaacctggcagagtcttcatatgtcact
atcaaggtgaaggaagggactgcatcagctggaaaagacttcctcattagccattcttcc
cttattcagtttggtccaggagtgtcaaagcgcagctggcaaatccagataattcaggat
cagcttgaggaggctgtggagaagtttgaagtgctgctggtctcccctgaaagcacagtg
atcggcagcatcgacaaggctccggtcatcatcagggactcaggaagtgttctgttacac
accacaggacagactaagctgaaccaagatcaggcaaaagaggtttcatcagacacatac
aacatacaacatggatccattcagctagagaagctgcccctcggcacagaatccgtgatc
tggagccggggagactccaggcttggagcacatgtcccaaaaaataaacttaaacttatg
ggaaacccaaagtctattgcaccttcatcagtttttcacaatggtacagatattgtttac
acgtatcatggcatcatgcaaatgcaagtagaggacaacacatctccgttgaggaaggaa
agaaaggcaaacatccatgtggttagcaggggagcacaacagccggtgccagctgtgctt
accgagtcaaagtcagggcatcacagaaagatctcaaaaccagaaaaaacagcactggct
aaaggacatgctaaagcttccataccaaagccctgtgtaccacaactgatgggactcctg
catttccaccagaccaccaatcagctatttcactgcgacggtgtctcctggaagccctgg
gccccaactgatgagatagtgagtgctcagatgtgtcctccgggatggacctttcacgat
ggctactgtcactacctcagcaccgagcaaaaggttgcatggagcacagctaatagggtc
tgcagagagagatacaaaggcacattggtaagcgttctctctaatgtcaaaatggattgg
ctttgggacttcagcggaagaaaaccattttggataggccttaatgacagggatggcaga
ggacgctgggaatgggcgggtggtgagccagtcagctacactaactggagaaagacaccc
tcccgttccaaaatgaagggaaacaaaaggtgtgtccaggtgtggagaagggcaaagtgg
caagtcagggactgcaagaggagtataggtcatcgctttgtgtgttcaataaaaacttga
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integrated database retrieval system
