Gasterosteus aculeatus (three-spined stickleback): 120823658
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Entry
120823658 CDS
T07457
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03013
Nucleocytoplasmic transport
gat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120823658 (upf1)
03015 mRNA surveillance pathway
120823658 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120823658 (upf1)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120823658 (upf1)
5.6.2.5 RNA 5'-3' helicase
120823658 (upf1)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120823658 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120823658 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
AAA_16
Helicase_RecD
nSTAND3
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120823658
NCBI-ProteinID:
XP_040039763
LinkDB
All DBs
Position
VIII:complement(10500480..10513767)
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AA seq
1105 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDIFKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDET
SVSGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATVVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESP
VSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICC
TCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
AKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGF
DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITP
YEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLND
PRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSK
PRKLVNTINPGGRFMSTAMYDAREALIPGSAYDRSSTAGRPSNMYFQTHDQIGMIGAGPG
HMSAMNIPIPFNLVMPPMPPPSYLGQTNGPAAVRGAMKGKPGRSGRQRARGSAHQGASQG
NGPNSQASQDGASQPFSQGPLTQGYISMSQPSQMSQAGLSQAELSQDSYLGDEFKSQIDV
ALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaaggccagacccaaagccagctggacaaccaggtaaatggt
cctgatgagggtcttctcaacggcggagtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggacgaggaagacacgtactacactaaagacctgcca
ctgcacgcgtgcagctactgcggtattcacgatccagcatgtgttgtttactgcaatacc
agcaagaagtggttctgcaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtaacgctgcataaagatgggccgctgggcgagaca
gtgctggagtgttacaactgtggttgtcgcaacgtcttcctcctgggcttcatcccggct
aaggccgattccgtcgtggtgctactctgccgacagccgtgtgccagccagagtagcctc
aaggatatcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctg
tcctggctggtgaagatcccatcagagcaggagcagcttcgagcccgtcagattactgcc
cagcagatcaacaagttggaggagctgtggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcatgtgctgctgcgttatgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggggatgagatctgcctgcggtacaagggagacctggcccctttgtggaaaggcataggt
catgtcatcaaagtccctgacatctttaaagactatggggatgaaattgccattgagttg
cgtagcagtgttggagcacctgtggaaatccctcacaacttccaggtcgactttgtgtgg
aagtccacgtcctttgacaggatgcagagcgccctgaagacttttgcggtggacgagacc
tccgtgtctggttacatttaccataaactgctgggccacgaggttgaggatgtcaccatc
aagtgccagctgccaaagcgtttcactgcgcagggcctgcccgacctcaatcactcacag
gtgtatgctgtaaagacggtgctccagaggcctctgagtctgatccaaggtccccctggc
accgggaagactgtcacctcggcaactgtcgtctaccacctgtcccgacaaggcaacgga
ccagttctggtgtgtgctcccagtaacattgcagtggatcaattgacggagaagattgac
aagactggactgaaggtcgtcaggctttgtgcgaagagccgggaggccatcgagtccccg
gtatccttcctagctctccacaaccagatcagcaacatggacagtatgcccgagcttcag
aagctacagcagctgaaggatgagactggcgagctgtcctctgccgatgagaagcgctac
agggctttgaagcgcacagctgagagggagctgctcatgaacgcggatgttatctgttgt
acctgcgttggagctggagatcctcgtctggctaagatgcagttccgctccatcctgatt
gacgaaagcacccaggccacggagccggagtgcatggtgcctgtggtgcttggagccaag
cagctgattctggtgggtgatcactgccagctgggtcccgtggtgatgtgtaagaaagca
gccaaggcaggtctctcccagtccctgtttgagcgcttggtggttctggggatccggccc
atccgcctgcaggtccagtaccgcatgcacccggctcttagtgccttcccctccaacatc
ttctacgagggctccctgcagaacggcgtcactgcagctgaccgcatcaagaagggcttt
gacttccagtggccgcagccggacaagcccatgttcttctacgtgactcagggtcaagag
gagattgccagctctggaacctcctacctcaacaggactgaggctgcaaacgtggagaag
atcaccaccaggctgctgaaggctggagccaaacctgaccaaatcggcatcatcacgccg
tacgagggccagcgctcctacctggtccagtacatgcagttcagcggctccctgcacacc
aaactctatcagcaagtggaaattgccagcgtggacgcctttcagggcagagagaaggac
ttcatcatcctttcttgtgtccgtgccaatgagcaccagggcatcggcttcctgaacgac
ccgcgccgtctcaacgtggcgctgacccgagccaagtacggcgtgatcattgtgggaaat
cccaaagctctctccaagcaaccgctgtggaacaacctgctgaacaactacaaggaacag
aaagtcctggtggaggggcccctgaacaacctgagggagagcctcatgcagttcagcaag
ccccgcaaactggtcaacaccatcaaccctgggggacgtttcatgagcactgcgatgtac
gacgcccgtgaggccctcatccccggctctgcttacgaccgcagcagtactgccggacgt
ccgtccaacatgtactttcaaacccacgaccagattgggatgattggggcgggccccggt
cacatgtccgctatgaatatccccattcccttcaacctagtgatgccgccaatgcctccg
cccagctacctgggtcagaccaacggccctgctgcagttcgcggagctatgaagggcaag
ccgggccgcagcgggaggcagagggcccgaggatcggcacaccagggtgccagtcagggt
aacggacccaacagccaggccagccaggacggggcctcccagcccttctcccaggggccg
ctgactcagggctacatctccatgagccagccctcccagatgagccaggctggcctctct
caggccgagctgtcccaagacagctacctgggcgatgagttcaagtcccaaatcgacgtg
gctttgtcccaggactccacctaccagggtgaacgtgcataccagcatggtggggtgact
ggactgtcacagtactaa
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integrated database retrieval system
