Gasterosteus aculeatus (three-spined stickleback): 120824006
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Entry
120824006 CDS
T07457
Symbol
lnx1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase LNX
KO
K10692
ligand of Numb protein X 1/2 [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120824006 (lnx1)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120824006 (lnx1)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120824006 (lnx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-RING_4
zf-Nse
U-box
zf-TRAF
zf-P11
Motif
Other DBs
NCBI-GeneID:
120824006
NCBI-ProteinID:
XP_040040476
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All DBs
Position
VIII:complement(19789286..19808197)
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AA seq
765 aa
AA seq
DB search
MSIQEEGAQGGGASSPLSPADYGPATPPPDLCAACGHCHQLEENHEYLYVEEVDDDLVCH
ICLQALLWPLDTPCGHTYCRECLTSFLLESDFCPVCRAPLMLQSCRKPSLLVHKLLDKLT
VACPFSQHCAEEMARGDLEDHIRSRCKGASHYGLSADRKRRSQEGECTDSTSELTLATLP
GDGPASAAVALLSDESGLVNPAFDPSMEDNSQSGSTTSLTARSGSKKIRNFDRSSVRSRS
FRRLNRAFSVLRRTKSGTAVSHETSEERDNARNASSPQEVLALPQLHHLIPDGELTSIKI
TRADPSEPLAISIVGGNETPLVRVLIQDIYREGVIARDGRLLPGDMILKVNGIDISNVPH
CYALATLKQPCQLLRLTVLREQRHRYHSHSHAHQVPGPTRPTAPTRDESVHVLLSKSIPD
EQLGIKLVRRPEEHGVFVFHLLDGGLAARDGQLCVGDRVLAINGHDLRYGAPEHAALLIQ
ASEEGVHFIVSRQIRLPTPDILQEAPWGMDGPPPYSPVDIEQTLLDSCQKPACYEKTVTL
TKEPYDSLGMTVAGGMSSRGWDLPIYVTNVDCDGVVGQEGSIRKGDILLNVNGLDLTGVT
RGEAVANLKNTSSPVVLKVLEMRPPEEGLQESPLPSCLGPAAPPDSTKSPAPGDDYSPLW
VSWLQLPRHLYCCKDIVLRRSTSGSLGFSIVGGQEEVNCNQSFFIRSIVEGTPAYNDGRI
RCGDILLEVNGTSTWGMTHTALVRLLKELRGRITLTIVSWPGSLL
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccaagaggagggcgcgcagggcgggggcgcctcctcgcccctttcccccgcc
gactacggaccggcgaccccgccccccgacctgtgcgctgcgtgcggccactgccaccag
ctggaggagaaccacgagtacctgtacgtggaagaggtggacgacgacctggtgtgccac
atctgcctgcaggcgctcctctggcccctggacacgccctgcggccacacctactgccgc
gagtgcctcaccagcttcctgctggagagcgacttctgccccgtgtgccgcgcgccgctc
atgctgcagagctgcaggaagcccagcctgctggtccacaagctgctggacaagctgacc
gtggcgtgccccttcagccagcactgcgccgaggagatggcccggggcgacctggaggac
cacatcaggagcaggtgcaaaggggcgtctcactatgggctctctgcggacaggaagcgg
cgctcgcaggagggcgagtgcaccgacagcacgtcggagctcaccctcgccacgctgccc
ggcgacggccccgcctccgccgccgtggcgcttctgtcggacgagtccggcctggtcaac
cccgccttcgaccccagcatggaggacaacagccagtcgggcagcaccaccagcctgacg
gcccgcagcggcagcaagaagatcagaaacttcgaccgctcgtcggtgcggagccgctcc
ttccggaggctcaaccgggccttcagcgtcctgcggaggacgaagagcggcaccgcggtg
agccacgagacgtcggaggagagggacaacgcccgcaacgcctcctcgccccaggaagtg
ctggctcttcctcagctgcaccacctgatccccgacggggagctcaccagcatcaagatc
acacgggcggatccctcggagccgctggccatcagcatcgtcgggggcaacgagaccccg
ctggtccgcgtcctcatccaggacatctacagggagggcgtcatcgcccgggacggacgc
ctgctgcccggcgacatgatcctcaaggtgaacggcatcgacatcagcaacgtcccccac
tgctacgccctggccaccctcaagcagccctgccagctgctccgcctgacggtgctccgc
gagcagcgccaccgctaccactcgcactcgcacgcccaccaggtgccggggcccacgcgt
cccacggccccgacgcgggacgaaagcgtccacgtgctgctgagcaagtccatcccggac
gagcagctgggcatcaagctggtgcggcggccggaggagcacggcgtcttcgtcttccac
ctgctggacggcggcctggcggcgcgcgacgggcagctgtgcgtcggcgaccgcgtgctc
gccatcaacgggcacgacctgcgctacggggcgccggagcacgccgccctgctgatccag
gcatcggaggagggcgtccacttcatcgtgtcccgtcagatccgcctccccacgccggac
atcttacaagaggctccgtgggggatggacgggccccccccctactcccccgtggacatc
gagcagacgctactggactcctgccagaagccggcgtgctacgagaagacggtgacgctg
accaaggagccctacgactccctcggcatgacggtggccggcggcatgtccagccgaggg
tgggacctccccatctacgtcaccaacgtggactgtgacggagtggtggggcaggagggc
tccatccgaaaaggtgacatcttgctcaacgtgaacgggttggacttgacgggggtgacg
cgaggcgaggccgtggccaacctgaagaacacctcctctcccgtggtgctgaaggtgctg
gagatgcgtcctccggaggaggggctgcaggagtcgccgctgccctcctgcctggggccc
gcggccccccccgacagcaccaagagcccggcgcccggcgacgactactcgccgctgtgg
gtgtcctggctgcagctgcccagacatctctactgctgcaaagacatcgtgctgcggagg
agcacctcgggcagcctgggcttcagcatcgtgggggggcaggaggaggtcaactgcaac
cagtccttcttcatccgctccatcgtggaggggacgccggcctacaacgacggcaggata
aggtgtggggacatcctgctggaggtgaacgggaccagcacctgggggatgacccacacg
gcgctggtccggctcctcaaggagctgcggggcaggatcacgctgaccatcgtctcctgg
ccgggcagcctgctgtag
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