Gasterosteus aculeatus (three-spined stickleback): 120826516
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Entry
120826516 CDS
T07457
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03022
Basal transcription factors
gat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120826516 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
120826516 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120826516 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120826516 (gtf2h4)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120826516 (gtf2h4)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120826516 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
120826516
NCBI-ProteinID:
XP_040044816
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All DBs
Position
X:200200..209059
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AA seq
459 aa
AA seq
DB search
MKLRVQLQCKNLHEYLRELSPDVLDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAALALWVKVDSQKDHEECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGK
AWADEGSTLGPDRHARDIESLDRYAMERWEVILHFMVGSPCAAVSQDLAQLLVQAGLMKS
EAGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTTSSSSSISVAGDA
GFIVVETNYRIYAYTDSELQIALVALFSEMLYRFPNVVVAHVTRESVQQAIANGITAQQI
IHFLRTRAHPVMLKQTPVLPPTITDQIQLWELERDRLQFTEGVLYNQFLSQADFEVLRDR
AQGLGCLVWQDVAHRVMVVSPHGHSEVKRFWKRQKTPHT
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgggtccagttgcagtgtaagaacctgcacgagtacctgagagagctgagt
ccggacgttttggatcggctgtacaaccacccggccacgtgtctggctgtgtacagggaa
ctgccccctctggccaagaactacgtgatgcgcatgctgttcctggaccagccgctgccc
caagcggctctggcgctgtgggtcaaagtagacagtcagaaggaccacgaggaatgcgtg
tcggtgttggcgggactccgcctgtggcacagtcagcagctgcagggaggtctgcaggga
tacatcctaaacccagtgttcaaagacaacctgaggatcgctctgctgggcgggggcaaa
gcgtgggcagacgagggcagcactctgggtcctgaccgccatgcgcgggacattgagagc
ctggaccgctacgccatggagcgctgggaggtcatcctgcatttcatggtgggctctccg
tgtgctgctgtcagtcaggatctggctcagctgctggtccaagcaggcctcatgaaaagt
gaagcaggagaggcgccctacatcacatccgctggtttccagttcctcctgctggacacc
gcctctcagctgtggtacttcaccctgcagtacctcaaaaccgctcagactagagggatg
gacctggtagagatcttgtccttcttgttccagctcagcttctctactctcggcagagat
tactccgtggagggcatgagtgagtcattgctcactttcctgcagcacctgcgagaattt
ggactcgtcttccagaggaagaggaagtcaaggcggtactaccccaccagactagccata
accctggctgcaggagtcaccacctcctcctcatcctccatctctgtagctggagatgca
ggcttcatcgtggtagaaaccaattatcgtatctacgcctacaccgactccgaacttcag
atcgccctggtggccctcttcagtgaaatgctttatcgcttccccaacgtagtggtggcg
catgtaaccagggagtccgtgcaacaggccattgccaacggcatcacagcacaacagatt
atccacttcctgaggaccagagctcaccctgtcatgctcaaacagactccagtgctgcct
ccaactataacagaccagatccagctgtgggagctagagagagatcgactgcagttcaca
gagggagtgctctataaccagttcctctcccaggctgacttcgaggtgctccgagacaga
gctcagggtctgggctgtctggtgtggcaggacgtagctcacagagtgatggtggtgtca
ccgcacggacacagtgaggtcaagaggttctggaaacggcagaagactccacacacctaa
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