Gordonia alkanivorans: C5O27_05895 Help Entry C5O27_05895       CDS       T05876                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism gav  Gordonia alkanivorans Pathway gav03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:gav00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     C5O27_05895  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:gav03400]     C5O27_05895 Enzymes [BR:gav01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      C5O27_05895 DNA repair and recombination proteins [BR:gav03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      C5O27_05895 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Motif Other DBs NCBI-ProteinID:  AZZ83574 UniProt:  A0A3T0V551 LinkDB All DBs Position complement(1284082..1286478) Genome browser AA seq 798 aa AA seqDB search MAGGENLEVDGRRISITNLSKVLYPATGTRKYDVIDYYSRIADVMLPHLRNRIVTRKRWP NGVESTPFFEKDMPDSAPDWVRRYGIQHSERVIEYALAEDRATLVWLAQMAALEIHVPQW QLPIGPDGERMANRIVFDLDPGPRVPLHETAAVAVEIRNWLGGTTTYPVTSGGKGIHIYA RLPKPVSSEAARKVAREVANEFARQNSDFITANMSKKIRDDKVFIDWSQNNASKTTLSPY SLRGREQPWVAAPRTWDEIEDPKIAQLLYTEVLDRVADVGDLLGGLDAPYDDDPATDADK HGAEEPDAGDSQAGQIINLREYRRKRDESKTPEPFGDENHRQRLRESDEDADTESETGPR EPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEG DIPAGEYGGGHVSIWDKGTFELEKWREKEVIVRLHGEKVQGRYALIRTGDKNWLAHLMTD EPRPIVPDSLTDPRPMLATDDPIDKLNERDWAFEGKWDGYRLLVRSIGGEFRLTSRSGID MTKDFPEFAGIADDLGLMDVVLDGEAVAIDSTGRTNFTLFTSRKHTEEQYTLKLHLFDIL YLNGTSLLRKPWSVRRELLEELATAFRRSPYVDVPPLLPAPASAAIEYSREHNLEGVVAK RRDSVYQQGRRSTKWLKHKNWSDIEVVVGGYRPGRGNRSHTIGSLLLGLPEETGLRYVGR VGTGFTDAQLRALAEELEPLEISRSPFLDKLDRPIASSAVWVLPKIVGEVRFMDWTTAGH LRHPSWRGIRRDKLPGDL NT seq 2397 nt NT seq  +upstreamnt  +downstreamnt atggcaggcggagagaacctggaggtcgacggccgccggatctcgatcaccaatctctcc aaggtgctctatccggcgaccgggacccggaagtacgacgtcatcgactactactcgcgc atcgccgacgtcatgctgccgcatctgcggaaccggatcgtcacccgcaaacgctggccc aatggtgtcgagtcgacgccgttcttcgagaaggacatgcccgacagtgcacccgactgg gttcgccggtacggaatccagcacagcgagcgggtcatcgagtacgcactggccgaggat cgcgccacgctcgtgtggctggcgcagatggcggcgctggagatccacgtcccgcagtgg caactaccgatcggccccgacggcgagcgcatggccaaccgcatcgtcttcgatctcgac cccggtccgcgggtccccctgcacgagaccgcggccgtggcggtggagatccggaactgg ctgggcggcaccaccacctatccggtgactagcggcggcaagggaatccacatctacgcc cgactgcccaagccggtgagctccgaggccgcacgaaaggtggctcgcgaggtggccaac gagttcgcccggcagaacagcgatttcatcaccgccaacatgtccaagaagatccgcgac gacaaggtcttcatcgactggagccagaacaacgcctccaagaccacgctgtctccgtac tcgttgcgcgggcgcgagcaaccgtgggtcgccgcgccccgcacctgggacgagatcgag gacccgaagatcgcccagttactctacacagaggtcctcgaccgcgtcgccgacgtcggc gatctcctcgggggtctcgacgcgccgtacgacgacgatccggccaccgacgccgacaaa catggcgccgaggagcccgacgccggggactcgcaggcgggtcagatcatcaatctgcgg gagtaccgtcgtaaacgggacgagtccaagacacctgaacccttcggcgacgagaaccac cggcagcgcctgcgcgaatccgacgaggatgccgacaccgaatccgaaaccggcccgcgc gaaccgatcttcgtcatccaggaacaccacgcgcggcgcctccactacgacttccgtctc gaacacgacggggtgctggtctcatgggccgtcccgaagaacctgccgaccgatccggac cagaaccggctcgcggtccagaccgaggaccatccgatggactacgccgacttcgagggt gacatcccggccggtgagtacggcggtggtcacgtatcgatctgggacaagggcactttc gagctggagaagtggcgggagaaagaggtcatcgtccgcctgcacggcgagaaggtgcag ggccggtacgcactgatccgcaccggggacaagaactggctcgcccacctgatgaccgac gagccgcgccccatcgtccccgacagcctcaccgatccgcgaccgatgctcgcgaccgat gatccgatcgacaagctcaacgaacgggactgggcgttcgagggaaagtgggatggttat cggctcctggtgcggtcgatcggcggcgagttccggctcacgtcccggtcgggaatcgac atgacgaaggacttccccgaattcgcgggcatcgccgacgatctcggactgatggacgtc gtcctcgacggcgaggcggtggccatcgactcgaccggccggacgaacttcacgctgttc acgtcgcggaagcacaccgaggagcagtacacgctcaaactgcacctgttcgacatcctc tatctcaacgggacgtcgttgctgcggaaaccgtggtccgtacgacgcgaactcctcgag gaactcgcgaccgcgttccgccggtcgccgtatgtcgatgtgccgccgctgcttccggcg cccgcgagcgcggcgatcgagtacagccgcgaacacaacctcgaaggtgttgtcgccaaa cgacgcgactcggtgtatcagcagggccgacgctccaccaagtggctcaagcacaagaac tggagcgacatcgaggtggtggtcggcggttaccggcccgggcgcggcaaccggtcacac accatcgggtcgttgttgctcggactgcccgaggagaccggactgcgctacgtgggacgc gtcggcaccgggttcaccgacgcgcaattacgggcgctagccgaagaactcgagccgctg gagatctcgcggtcaccgttcctcgacaaactcgaccggcccatcgcgtcgagcgcggtc tgggtgctgcccaagatcgtcggcgaggtgcgcttcatggactggaccaccgcgggccac ctacgccacccgagctggcgcggcatccgccgggacaaactccccggagatctctga

DBGET integrated database retrieval system