Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_2009
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Entry
GbCGDNIH1_2009 CDS
T00392
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbe03400
]
GbCGDNIH1_2009
Enzymes [BR:
gbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH1_2009
DNA repair and recombination proteins [BR:
gbe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GbCGDNIH1_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ABI62907
UniProt:
Q0BQJ5
LinkDB
All DBs
Position
2250317..2253247
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AA seq
976 aa
AA seq
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MRITSIPPDWPFLDTVASAWLGKGEQSPLDTADGIILLPTRRAARALADAFLRISNGRPL
LLPRITALGALDETPLALHGALDLPPAVDTPRRLAELTRLILALPDPALSADNAWMLARE
LAKLLDEAARAGIDLATSLPDAVDPSFAAHWQTTLTFLQIVTRAWPDWLAEEGLTDPAAR
QAALLRIQATHWQDHPPATRLWAAGISGAAPAEAMLLKTIARLKQGLVILPGLDMTMPEE
AWGMLEASHPQAGMRDLLAMMDARRDDVAPWGLTPPPSRPADRSRLLHQALLPAEALTLW
RETTPPSSESVFRLEAEDEQQEAVAIALILRDALETPGRRAALITPDRGLAVRVSTELAR
FGVIADDSAGEPLAETPPALFLRLLAETVRSGFSPVSLLSLLKHPMTALGMDRLMTLHAA
RGLEQHALRGPRPPPGLSGLRAVLEAGKTEAAALIDRLEQVLHPLIDLVAQEKLAPHDYL
RALLTAGEAVAASDTHSGAERLWALEEGEALAVLLAETLPALTVLPPQPPDTLPGLFDAV
LEGIAVRSRRALRRFGENDAEHPRLFIWGLLEAQLQHVDVAVLGGLSEGVWPPATDPGPW
MSRPMRSRVGLPSAERIIGQAAHDFVQAVCSASVAILSCPARREGAPVVTARWLARIDAL
LKGHGKHLPTHPATAWAGILDQPERPAPVRPPRPCPPRRSRPRSLSVTEIGRWLSDPYRV
YAERILKLKPLDPLEQDTDAADFGMIVHDGMQCFLENAARQWPDGDLPAALRTAFRVALD
RHNPRPALRSWWLPRLDRIAAWVATREQRDTKIHTETSGIWHLSAFPGGPFTLKGRADRI
EIRQDGSIRLLDYKTGTVPSAPAILSGEAPQLPLEAAMMKAGAFPDVPAQYPSELVYWRL
SGGRVAGEEIILGRKAPAAWAEEQAQLAAEKLRDLVMRYDDPDFPYLAQPFAPGHAPMDA
YAHLARVPEWADGDES
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcacctccatcccgccggactggccgtttctcgacactgtcgcgtctgcctgg
ctggggaagggtgagcaaagcccgcttgatacggctgatggcatcatcctgctgccgaca
cggcgcgctgcgcgggcgctggccgatgcgtttctgcgtatctccaatggccgcccgttg
ctgttgccacgtatcacggccctcggcgcgctggacgaaacaccgctggccctgcatggc
gcactggatctgccgcccgccgtggacacgccccgtcgtctggcggagctgacacggctg
attctggcattaccagacccggccctgtcggcggataatgcatggatgctggccagagaa
ctggccaaactcctggacgaagccgcccgcgccgggattgatcttgcaacgtccctgccc
gatgcggtcgatccatctttcgcagcgcactggcagacgactctgacctttcttcagatc
gtgacccgtgcctggccggactggctggcggaggaaggtctgaccgatccggcagcgcgg
caggccgccctgctgcggattcaggcgacgcactggcaggatcatccgcctgcgacacgt
ctctgggcggcggggatttccggcgcggccccggccgaagcgatgctgctgaaaaccatc
gccagactgaagcagggcctggtgatcctgcccggcctcgacatgaccatgccggaggaa
gcatggggcatgctggaggcctctcatccacaggcggggatgcgcgacctgctggccatg
atggatgcaaggcgggatgatgtagcaccatggggattgacgcccccgccttcccgccct
gctgatcgctcccgtctgctgcatcaggcgctgcttcctgccgaagccctgacgctctgg
cgcgaaaccacgccgccttcctccgaatccgtgttccgtctggaagcggaagatgaacag
caggaggccgtcgccatcgcgctgatcctgcgggatgcgctggagacaccgggacggagg
gccgcgctgatcacgccggatcgcgggctggcggtgagagtgtcaaccgagttggcccgg
ttcggcgtcatcgccgatgacagcgccggcgaaccgcttgccgaaacaccccctgccctc
tttctgcgcctgctggcggaaacggtgcggagcggtttctctccggtctcgttgctatcc
ctgctgaaacatcccatgacagcgctgggcatggaccgtctgatgacgctgcatgcggcg
cgcgggctggaacagcacgccctgcgcggcccgcgtcctccgccgggcctgtccgggctg
cgtgcggtcctcgaagccggaaaaacggaagccgccgctctgatcgaccggctggaacag
gttctgcatcccctgatcgacctcgtagcacaggaaaagcttgcgccccatgactacctg
cgcgccttgctgaccgccggggaagccgtggccgccagcgatactcactccggcgccgag
cgtctgtgggcgttggaggaaggggaggcgctggccgtcctgctggcggagacgctgccc
gccctgacggtgctgccgccgcaaccgcccgatacgctgccgggcctgttcgacgcggta
ctggaaggcattgccgtccgcagccgccgtgccctgcgccgcttcggcgagaacgatgcc
gaacatccgcgcctgtttatctggggcctgctggaggcacagcttcaacatgtggatgtg
gctgtgctgggtggtctgagcgagggggtatggccccccgccacggatcccggcccatgg
atgagccgcccgatgcgcagccgtgtcgggctgccgagcgccgagcgaatcatcggtcag
gcggcccatgatttcgtgcaggcagtatgcagcgcctccgtggcgatcctgtcctgcccc
gcccggcgggaaggtgcgcctgtcgtcacagcacgctggctggcacggatcgacgctctg
ctgaagggacatgggaaacatctgccgacccaccccgccaccgcctgggccggaatactg
gatcaaccggaacggcctgccccggtcaggccgcctcgcccctgcccaccccgcaggtca
cgtcctcgcagcctgagtgtgacggaaataggacgctggctgagcgatccttatcgagtc
tatgcggagcgtatcctgaaattgaaaccgcttgatccgctggaacaggatactgatgcc
gccgatttcggcatgatcgtgcatgatggcatgcagtgttttctggaaaatgccgcccgg
caatggcccgatggggacctgccggccgccctgcgcacggcattccgggtcgcgctggac
cgccacaatcctcgccctgccctgcgaagctggtggctgccgcgtctcgaccggatcgca
gcctgggtggcaacccgggagcagcgggatacgaaaatccataccgaaacctccggcatc
tggcatttatcggctttcccgggcggccccttcacgctgaaaggccgggccgaccggatc
gagatcaggcaggacggcagtatccgtctgctcgattacaaaaccggcacggttccctct
gcaccggcgattctgagcggagaggctccgcaactgccgctggaagccgcgatgatgaag
gcgggggccttcccggatgtaccggcacaatatccgtccgaactggtgtactggcggctc
agtggcggccgtgtcgccggcgaggaaatcattctcggcaggaaagcccccgccgcatgg
gccgaagaacaggcgcaactggcggccgagaagctgcgcgatctggtcatgcgctatgac
gatccggattttccctatctggcacaaccttttgcccccggccatgcgcccatggatgct
tatgcgcatctggcccgcgtgccggaatgggcggatggtgacgagtcatga
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