Citrifermentans bemidjiense: Gbem_0128
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Entry
Gbem_0128 CDS
T00749
Symbol
ligD
Name
(GenBank) DNA ligase D, ATP-dependent
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gbem_0128 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbm03400
]
Gbem_0128 (ligD)
Enzymes [BR:
gbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gbem_0128 (ligD)
DNA repair and recombination proteins [BR:
gbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Gbem_0128 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACH37159
UniProt:
B5E922
LinkDB
All DBs
Position
complement(152612..155227)
Genome browser
AA seq
871 aa
AA seq
DB search
MGLEEYQRKRNPGRTPEPPASEGKSERSLRFVVHKHAASHLHYDFRLELDGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYDYGDFEGVIPKGNYGAGEVIVWDTGSYEAPGAADPEQGVR
LLREGLKKGDLKFILVGRKLNGEYALVRIKGDKENTWLLIKKNDRFASTEDVTLQDRSVV
SDVTIEELKTGRKPQALPLAAAEAAEPVGPVRPAAPMPHRLTPMLANSAAEPFDDPDWLF
EIKLDGYRAIAEIEGGEVQLYSRNNLSFNKRFPAIVQSLASLPVTAVLDGEVVALDAKGR
SSFQLLQNSLRTGEKNIYYYAFDLLYLDGEDLRAEPLQARKERLRNLLPELPWVRFSDHI
REYGRQFFELARENNLEGILAKRADSRYFAGRRSGDWLKIKIRLQQEAVICGFTQPRGSR
KGLGSLVLGVYENGELVYIGLTGGGFDDVGLKEMYAALQPLIQPESPFRQQVKTSMPVTW
TKPVLVCEVEFAEWTDENVMRLPIFLGLREDKDPRSVQREIFPAEVQPPVHHAQTDQEED
VGEPAAGEKVPAEETVATAKPFVKKGGAKKGEVNLVIDGQRLTLTNLDKVFWPEEGYTKG
DVIDYYRKMARVILPYLMDRPESMYRTPHGIAEGGFYQKETADLIPPWITAREIYSKHVD
KNIKFLVCQDEATLIYMANLGCIEINPWLSRLQQLDYPDYLVIDLDPEDISFEKVIETAL
AVHEVLESAGAASFPKTSGATGIHIYVPLGARYDYDTAGVFAKLVATLAHHKVPGFTSLL
RSPRQRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSAPLRWEEVKPGLDPRQFTINTI
GKRLEQVGDLFQGVLGPGIDMERCLERLQNG
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaagagtatcagcgcaaaaggaatccggggaggacgccggagccgccggcc
agcgaggggaagtcggagagatctttacggttcgtggtgcataagcacgcggcctctcat
ctgcattacgactttaggctcgagctcgacggagttctgaaaagctgggccatccccaag
ggcccctcgctggatccctcggtaaaaaggctcgccatgatggtggaggaccacccctac
gactacggcgacttcgagggggtgattcccaaggggaattacggggcaggcgaggtgatc
gtctgggacaccgggagctatgaggccccgggggcggccgatccggaacagggcgtgagg
ctgctgcgcgaggggctgaaaaagggagacctgaaattcatcctcgtcggccggaaattg
aacggggaatatgccctagttcgcatcaagggggacaaggagaacacctggcttttgatc
aagaaaaacgaccggttcgcctcgaccgaggacgtgacgttgcaggaccgttcggtggtc
agtgacgtcaccatcgaggagctaaagacggggaggaagccacaggcgttgcccctagcc
gccgcagaggcggcggaaccagtcggacctgtcagacctgccgctccgatgccgcaccga
ctcactccgatgctggccaactccgcggccgagcccttcgacgatcccgactggctcttc
gagataaaactcgacggctaccgcgccatcgccgagatagagggcggcgaggtgcagctc
tactcgcgcaacaacctctccttcaacaagcgcttccccgccatcgtccagtcacttgct
tccctgccggtcacggcagtgctggacggtgaggtggtagccctcgacgccaaggggagg
tcttccttccagctcttgcagaacagcctgcgcaccggggagaagaacatctactactac
gccttcgacctcctctacctcgacggcgaggacctgcgcgccgaaccgctccaggcacgc
aaggagaggcttcgcaacctgctccccgaactcccctgggtccgcttcagcgaccatatc
agggagtacggcaggcagttcttcgagcttgcccgcgagaacaacctggagggaatcctc
gccaaaagggccgacagccggtattttgcgggaagaagaagcggcgactggctgaagatt
aagatacggctgcagcaggaggcggtgatctgcgggttcacccagccccgagggagcagg
aaaggattgggctctctcgtgctgggggtctacgaaaatggcgagctggtctacatcggg
cttaccggaggggggttcgacgatgtggggttgaaggagatgtacgctgcgctgcaaccg
ctgatccagccggagtcccctttccggcagcaggtgaagaccagcatgccggttacctgg
accaaaccagtgctggtctgcgaggtcgaattcgccgagtggaccgacgagaacgtcatg
cgcctgcccattttcctggggcttcgtgaggacaaggaccccaggtccgtgcagcgggag
atctttcccgcggaggtccagcccccggtgcaccatgcgcagacggatcaagaggaggat
gttggcgagcctgcggcaggggaaaaggtgcctgcagaggagacggttgccacagccaag
cctttcgtgaagaaggggggcgcgaagaaaggggaggtaaacctcgtcatcgacgggcag
cggctcaccctgaccaacctggacaaggtcttctggccggaggagggatataccaagggg
gacgtcatcgactactaccgcaagatggcacgggtgatactcccgtacctcatggaccgc
ccggagtcgatgtaccgtacgccgcacggcatcgccgaaggaggtttctaccagaaggag
acggccgacctgatccccccctggatcaccgcccgggagatctattccaaacacgtcgac
aagaacatcaagttcctcgtctgccaggacgaggcgacgctcatctacatggccaacctg
ggctgcatcgagatcaacccatggctgtcgcggctgcagcagctcgactaccccgattac
ctggtgatcgacctggaccccgaggacatctccttcgagaaggtgatcgagaccgcgctc
gccgtgcacgaagtcctggaaagcgcgggcgcggccagtttcccgaagacctccggcgcc
accggcatccacatctacgtcccgctgggagcacgctacgactacgacacggcaggggta
ttcgcgaagctggtggcgaccctcgcgcaccacaaggtccccggcttcaccagcctcttg
cgcagccccaggcagcgccagaaaaaggtgtacctcgacttcctgcagaacaagccgggc
cagaccctcgccgccccctacagcatccgcccccgccccggggcgaccgtttcggcgccg
cttcgctgggaggaagtgaagccgggtctcgacccgcgccagttcaccatcaacaccatc
gggaagcggctggagcaggtcggcgacctgttccaaggcgtcctcggtcccggtatcgac
atggagcgctgcctggagcggctgcaaaacgggtag
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