Citrifermentans bemidjiense: Gbem_2718
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Entry
Gbem_2718 CDS
T00749
Name
(GenBank) peptidoglycan-binding protein, DUF11 and OmpA domain-containing
Organism
gbm
Citrifermentans bemidjiense
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF11
OmpA
SdrD_B
Glyco_hydro2_C5
CarboxypepD_reg
Collagen
Motif
Other DBs
NCBI-ProteinID:
ACH39722
UniProt:
B5EHS3
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All DBs
Position
complement(3137981..3143983)
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AA seq
2000 aa
AA seq
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MAIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNE
TQVSVKDLSDPALVPPRTATTNANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQA
PLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRATPPAGSEGRVALIAVSATSVL
VPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPL
DPLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNAS
IVNTAGVSTAGNAAPFLSNSTLNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGV
LDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSWDLGSFEHGAFKVLNYRLVVS
ADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVP
DRGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAF
AGVGCSQFITVPFGGPARGDFALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSP
TSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPADAKTSVPFKVELLDSAGRRVP
GSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAA
QAALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKIL
GKYLLTAAYDSDKERRDGVFQAIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLM
AGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESRTEETVTRDDIPGNGTSGHYF
LSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFL
NPVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRL
GERLTLKGEGAVSENLEHGRGSAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELG
TEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAGMVKKFSLLHLEGGVKVVREE
RDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAF
LTEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREG
FSLDSRTGYQIEHALSQQRGQAIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTL
GGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPSLTLLGKLSLWDRDADAGDDV
IFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQ
GKYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGS
AGYRVYRNVVLSAGYNFARLDDRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPV
PPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFTLLVNGERAKLPSTEVTLTRE
HLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLG
DTDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTL
EAKHLLKGAARVLRARPQEKVIVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGS
RLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPVSPDDRYRTKSFVVINGRSIP
VDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVR
VDADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSK
LMNLRLRSERQTMPAARGER
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgctgcaggcaagaagaggaggaggtggggggggctgcgcctgatcgcgctc
gcgctcctgcttgcccttcccggtactgcattttcgctcaccccggcagggaccgtcatc
aggcacgatttctcagcacgcttcgccaccccaggtcttcgggaagtccgctccaacgag
acccaagtgagcgtgaaggacctttccgacccggcgctggttcccccgcgtaccgccacc
accaacgccaacgttcctgtcgatttccgtcacaccctcaccaaccgggggaacttcccc
gacagtttcaggttgaaagccgcggcggtcgacgcggcgctgccggagaacgggcaggcg
ccgctgctccgcttttacgccgctgacggcgtgaccccgtttccccacgatgccggcggc
ttgcaggtggtaggcccccttgaacccggcgcttccgtcgagctggtattgagggcaacg
ccgccggccggaagcgagggacgggtggcgttgatcgcggtcagcgccacctccgtgctg
gtgccggcgcgaagcgcgagcctgaccaaccagctacaggtgccggccggaggtgtttcc
ttcttcaaggccgtttcaccggtggggagcgtacttcccgggaccgtcctgacctacagc
atctcgcttgggaacagcgggggaacgcccgtggccggtgtgcgggtggtcgaccctttg
gatccccttctcgaataccagccgggaagtgcggcgcttcctgccggagttcccggaacc
gtcagtttcgacgccgcaacccggacgctcgtcttcgacatatcgtcgctccccgccgga
ttcagcggggaaatcaccttccaggcccgcgtacgcgatgacgccccgggaaatgcctcc
attgtcaacaccgccggcgtctccactgcgggaaatgcggcacccttcctcagcaacagc
accctcaacaccgtgctggtcagattgctccaggtaaccaagactgcgggaagcagctca
gctgaggccggcgacatagtgtcatacgcggtgcgggtgcagaacatcggcgacggcgtc
ttggaccatgtgacggtagccgaccgtattccccgcggcttccgctatctgaaggggtcg
agccacgtggacgggttcgccgtggcggacccggtgggaggggggcagcagttgagttgg
gacttggggagtttcgagcacggagccttcaaggtgctcaactaccggttggtcgtttcc
gccgacgcccccgtcgggaccgccgtcaactgggcccgggccaccggaacccctgccagc
ggcggcagcgtcgtctcccctcccgccagtgccgccgttaaggtaaggggctccgtactc
gggagcaaggccatcatcatggggagggtcttccatgacggcaacgggaacggcgtgccg
gaccgaggggagcggggcgaggccggggtgcgggtttacctggaagacggttccttcgtc
ttcaccgacgtcgaagggcagtacagtttcaccggggtttccgcgggcgaccacgtcgtg
aagcttgaccggtccaccctcaacccgggttttgtgtccgtgccgtacaacactgccttt
gccggggtggggtgttcgcagttcatcaccgtacccttcggcggtccggcgcgcggcgac
ttcgcgctcgccgcgaacccggcaggtccggcaggtccgacaggtccgacaggtccgaca
ggtccgacaggtccgacaggtccgacaggtccgacaggtccgacaagtccgacaagtccg
acaagtccgacaagtccgacaagtccgacaagtccgacgcagtcggcgcctccggctacc
gaaccggctgccgcgtcccggcttcggctcacccccgaccgcgtcgagcttccggcggac
gccaaaacctccgtccccttcaaggtcgaactcctcgactccgccggcaggcgggtcccc
ggttcgacaaccgtcaccctcttcctcgccaagggaaccatcttggagtcggacctggac
ccggccctcccgggccaccaggtccgcatcaccgacggcctgggcgtcttccaggtgcgc
tccggccgcgccaccggggacgacctcctcatcgccaaagacggcgacggcagcgccgcc
caggcggccctcttcttcagtccggaccggcgcgactggatcctggtcggcttaggctcc
ctcaccgtgggtggaaaggcggtgagcggcaacctggaaaagatcgacaaggacgaccgc
ttcgacgagggtatcttccacgaggaacggctcgccttcttcacccgcgggaagatcctc
ggcaagtacctcctgaccgccgcctacgattcggacaaggaacgccgcgacggcgtgttc
caggccatcgacccggagaagtactacccggtctacggcgacgccaccgacatagggtac
gaggcggagtcgcgcggcaagatctacctcaagctggaaagcggccgctcctacctcatg
gccggcgactaccgcaccgacctctccgaaaacgaattctcccgctacgacagggcgctc
aacggcgccaaattcgaggtcaacaccaagtcggttaccgtcaaagggttcgaaagccgc
accgaggaaacggtgacccgggacgatatccccggcaacggcacctccggccactacttc
ctctccaggcgggacgtcttcgagaacagcgaacgggtgcgcatcgaggtgcgcgaccgc
taccacaccgaacgggtcatcgccgtaaccgagaaggtccgctacgccgactattccatc
gattaccaggccgggaccatcctcttcaaggagccggtcccctccctggaccaattcctg
aacccggtcaccatcgtggtcaactaccaggccacaggccccggggaggagcgctacgtc
tacggcggacgcgccgagatccggtccgaaaacggctcgcatatcgggggcaccgccgtg
gtggaggagcaggcgcggcaggacaacaccctcttcggcctggacgccgcttggcgcctg
ggcgagcgcctgaccctgaagggggagggggcggtcagcgagaacctggagcatggcagg
ggaagcgcctggaaaacggagctcgccgcgcgtcccgtcgatcccctccttctgaacctt
tactaccggaaggtggagtccgacttcttcaacacctcgatgaccgggacggagcttggg
accgagaagtacggcggccgggccgactaccgtgtcggcgccgacaccctcgtcttcgcc
gagagcttcctgcaccgctttgaattgggggaccggaaactcttcgcgaaccacgcgggg
atggtgaagaaattctccctgctgcatttggaggggggcgtcaaggtggtgcgggaggag
cgggacggacggaccgaggaatcggacctggtctatgccggcgtcttcgcgcccctcacc
aaaaagctcgatgcgaccctcaggcgcgagcagcttctatccgcctccggcgtcgccgac
taccagacaaagaccttcgccaagctcgactaccggctcactgagcgcaccaaggccttc
ctcaccgaggagtaccaagagggctcccccctcatccgccaggccaccctgttcggcctg
gagagcaggctctcggaccggatgcggctcaccaccggctaccagatgtcctccggcgcc
tccggttactcccagcagagcaacgtcgacctcaacacgcggctcatggagcgggaaggg
ttcagcctcgattccagaaccggctaccagatcgagcacgccctgtcgcagcaaaggggg
caggccatcgtcgggctgaacagccgttaccgcgccgccgaggggctctacctcaactcc
tccctggagcgggtgcagacggtgcagggaaataccggcacccgcaccgcctttaccttg
gggggcgaatacctccgggccagggatctgaagctctccggccgctacgaggtgaggacc
ggcccgggggagaccgcctctctctacggcgccaacgccgcctacaagatgagcccctcg
ctcaccctcttggggaagctctcgctctgggatcgggacgccgacgccggcgacgacgtc
atcttcgacggctacctggggagcgccttccgtccgctggcgggccagccgctgcagctc
ctcaccctggcgcgctacaaggtcgaggacagacgctcgctccccggctccttcgaaagc
cgcagcgtcatcctctcggccgagccgacctacaggatcgtgagccgttggagcgcccag
ggaaaatacgccgggaagctcagctgggccgacggggtgggggggatgatgcagagctac
accgacctggtcctggccgggctctcctacgacctggcggagcgctgggagatcgcggcc
tacctgaagctcatgaaccagtacgacgcccgcatgcactcgctgggtgcggtgggaagc
gccggctaccgcgtctatagaaacgtggtcctttccgccggctacaacttcgccaggctc
gacgaccgggacttgaccggcgagaccttccaggggcagggcccctttgtcggcatcaag
gtcaagttcgatgaggacatgttcgagtcgcggcaggcgaaggtgatccccatcccggtt
ccgccccccgcccaggtcgccaaggttcccccccccgcggctctagtgccggcgctcctg
gttcgggcggagcggctggacgagccgctgcttctctccgggagcgcggaactattcacc
ctcctggtcaacggcgaacgggcgaagcttccttccaccgaggtgacgctgacccgggag
cacctgggttccctggagctcaaggggggaaggttccctgcgccgctggtcttcctggtg
agcgtggagcagccggaacaggtcggttcctggacgctcaaggtgatgaatcgcgagggg
gaggcgctgcgcacgcttgaggggaccggggcgccggcaaagcgcatcccctggcttggc
gacacggaccgccggaaggtggaacagggcgagatctatcagtaccaactgcaggtcacc
tacctggacggctcgatcttcagcaccggccgcgaactcttcggcgtcaaccgtcgcgag
gcggtactcctcaccctgtccggcggcgctttcgtcttcgaccgctccgagctgaccctg
gaggccaagcacctgctcaaaggggcggcgcgggtcttgcgggcgcgcccgcaggaaaag
gtgatcgtggaggggcataccgacggcatcgggagcgtggaatacaacatggcgctctcc
cagagacggtgcgacgccgccgccgactacctggtacgggaggaagggatagccggctcg
cggctgttgcggcgctggtacggaaaatcccgccccgtggccgacaacgtcaccaccccc
ggcaggaggctaaaccgccgcgtcgagctgaagggggatttcaaagagctgcatccggtc
tctcccgatgaccggtaccggacgaaatccttcgtggtgatcaacggccgcagcatcccg
gtggatcccctgggtcgcttcgacaccaccttcccgggcaacaccctcgatctcgacctg
gagatgggggactcgcaggggcgtttcctcgccacttcgctcccgcttcccgacctggcc
gtgaccgggccgccggccgagacgctggtcggctacggcaccgaagcctccggcgtcagg
gtcgatgccgacggcaaggggcactgcatgctttcgggaacggtcgaggggacctccatg
gagctcgcggggaggaaggtgccgctcgacgaggcagggcgcttcaccctcgatctcccg
cttgccgagggggaccaggtcctgggcgtggtgctcagaaacggctccggctgctctaag
ctcatgaacctgcggctccgttcggagcgccaaaccatgcctgccgcgcggggtgagcgg
tga
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