Geobacter benzoatilyticus: JZM60_05340
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Entry
JZM60_05340 CDS
T07995
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JZM60_05340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbz03400
]
JZM60_05340 (mfd)
Enzymes [BR:
gbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JZM60_05340 (mfd)
DNA repair and recombination proteins [BR:
gbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JZM60_05340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
Oxidored_nitro
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QSV46698
LinkDB
All DBs
Position
1117498..1120974
Genome browser
AA seq
1158 aa
AA seq
DB search
MAIADTHITKRIAGLLDPGSGRATLTGLRGSSPAYLLARFMAESGRQLLIIAPDAERASE
ICAETRFYSGRPSDILSFPSWDVSPFEKASPHADVTGQRLACLRRLMDRKAAAVVTTPAA
LRQRVLSRTMLDSASLYFLPGEESNRDEFLAKLVILGYLNVPLVEDRGTFAVRGGIVDIF
PPGFEQPVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMILTEDVLKAATPRIK
SRCDELEISPVARRELLEQLQQGLYPTGVEWLLPLFHPRLETLFDYAGDAVRVILDPDAL
AEENARLDAELETASAQAQERGELFASPAEFFLTAPETAGSIEAGRLVTIPYLTVAGEST
GKTAIALDIQENTDLKVDVSSDSERVLKPLVTRLNGWLEERQRVIIACHQRGQAQRLYEL
LSHYPLPLNISDRPFPAELERDDGKVNVVIGDLSRGFRLPEGKLIVIAEEEIFGRRQKRR
GVSELRKKQIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGDKLY
LPVDRLNLVQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAARQLHEG
HAFSPPDDLYREFEASFAYEETSDQMGAIMDVIGDMTSPKPMDRLVCGDVGYGKTEVAMR
GAFKAVMDGKQVAVLVPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVK
KGAIDVIIGTHRLLQSDVSFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIP
RTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARNSDDLIREAVMRELRRGGQVFFVHNRVQ
SIMNWAEHLRRIVPEAKIAVGHGQMEEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNA
NTLIIDRADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELG
AGFRLATHDLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGEERLERVEPEIN
LRIPAFVPEDYVKEPNQRLIIYKKLTQAENEEEVDEVMAELVDRFGKLPLAATYLLEVMK
LRIHFKRFLITMAEFDGRRLCLSFHQKTPVPPDTIIGLIRGNPKKYQFSPDFRLTAELAD
TSFEGVLEEARNLLKRLG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggccattgccgacacccatataaccaaacgcatagccgggcttctcgatcccggttcc
ggccgggccaccctgaccggactgcggggatcatctccggcctaccttctggcacggttc
atggcagagtccggccgccaactcttaataattgccccagacgctgaaagagcctctgaa
atctgcgcggaaaccagattctacagcgggcgcccctccgacatcctctcctttccatcc
tgggacgtctcccccttcgagaaggcttcaccccacgccgacgtgacaggccagcggctc
gcctgcctgcgacggctcatggaccgcaaggctgccgccgtggtgaccaccccggcagcc
ctcaggcaaagggtgctctcccggacgatgcttgacagcgcatccctttattttcttccc
ggcgaggagagcaatcgggatgaatttcttgcaaaactcgtcattctcggctacctgaac
gtcccgctggtggaagaccggggaaccttcgccgtacgaggaggaatcgtagacatattc
ccccccggcttcgaacagccggtgagaatcgagttcttcggcgacttcgtggagaccatc
agggctttcgatcccctctcccagcgctccctcgcccccctggaggagctcctcctcctc
ccctccagggagatgatactgaccgaagacgtgctgaaggccgccaccccgcggatcaag
agccgctgcgacgaactggagatatcccccgtggcccggcgggaacttctggagcagctg
cagcaaggcctctaccccaccggcgtggagtggctcctccccctcttccatccccggctg
gagaccctcttcgactatgccggcgacgcagtccgggtgatactggaccctgacgccctg
gccgaagagaatgcgcggctcgacgccgaactggaaacggcctcggcccaggcacaggag
cggggagagctcttcgcatcaccggcggaattcttcctgacagccccggaaactgccggc
agcatcgaagcaggacggctcgtgaccatcccctacctgaccgttgccggagagagcacc
gggaaaacagccatagcactggacatccaggaaaacaccgacctgaaggtggatgtctcc
tccgacagcgagcgcgtcctgaagcccctggtgacgcggctcaacggctggctggaggaa
cggcagcgggtgataatcgcctgccaccagcggggccaggcccagcgcctctacgaactc
ctctcccactaccccctccccctgaacatctccgaccgccccttccccgccgaactggag
cgggacgacggcaaggtgaacgtggtgatcggcgacctctcccgggggttccgcctcccc
gaagggaaactcatcgtcatcgccgaggaggaaatcttcggccgccgccagaagcggcgc
ggggtctcggagctgcgcaagaagcagatcatgacgtcgctggccgagctgaagcccggc
gactacatggtccacctggaccacggcatcggcatctaccggggattgcagcacatttct
ttgagcggctgcgccggggacttcatcctcctcgagtacgcgggaggggacaaactctat
ctccccgttgaccggctgaatctcgtccagcgctacgtgggggccgaggggctcgaaccc
agggtggacaagctggggggtacctcctgggaaaaggccaaggggaaggcccgggccgcc
gtacaggagatggccggggagctgctgcagatctacgcggcccgccagctccacgaaggg
cacgccttctctccccccgacgacctctaccgggagttcgaggcctccttcgcctacgag
gagacttcggaccagatgggggccatcatggacgtcatcggcgacatgacgagcccgaaa
cccatggatcgcctcgtctgcggcgatgtcggctatggcaagaccgaggtggccatgcgg
ggggccttcaaggcggtcatggacgggaagcaggtggcggtgctggtccccaccacagtc
ctggcccagcagcacctggagaccttcaaggccaggctcggcgcctacccggtcaccgtg
gaaatgctctcccgcttccgcacccccaaggaacagaaggaaatcctggagaaggtaaag
aaaggagccatcgacgtcatcatcggcacccaccggctgctccagagcgacgtcagcttc
aaggacctggggctcctcatcgtggacgaggagcagcgcttcggcgtcacccacaaggaa
aagctcaagaaatacaaagcagtggtggatatcctgaccctcactgccacccccatcccc
cggaccctctacatgtccatgatgggaatcagggacctctccatcatcgacaccccgccg
gtggaccggctggcggtaaagaccttcgtggcccgcaactccgacgacctcatccgcgag
gcggtcatgagggagctgcgccggggcggccaggtcttcttcgtccacaaccgggtccag
tccatcatgaactgggccgagcatctgcgccgcatcgtccccgaggcgaaaatcgccgtg
gggcacggccagatggaagaaggggaattggagaaggtgatgctcggcttcatgcacggg
gagacgaacctgctcctctgcaccaccatcatcgagtcggggctcgacatccccaacgcc
aacaccctcatcatcgaccgggccgacaccttcggcctggcccagctctaccagctccgg
gggcgggtcgggcgctccaagcagcgggcctacgcctacctcctgatccccggcgagggg
gccatctcgtcggacgcaagggagcggttgaaaatcatccaggagctgacggagctgggt
gccggcttccggctcgccacccacgatctcgaaatccgcggcgccggcgacatcctgggg
gccaagcagtcggggaacatcgccgccgtgggcttcgacctctacacggagctcctggag
gaggcgatccagaacctgaagggtgaggagcggctggagcgggtggagccggagatcaac
ctccgcatccccgccttcgtccccgaggactacgtcaaagagcccaaccagcggcttatc
atctacaagaagctcacccaggccgaaaacgaggaagaagtggacgaagtcatggcagag
ctggtggaccgtttcgggaaactccccctggccgccacgtacctcctggaggtgatgaag
ctgcggattcacttcaagaggttcctgataaccatggcagaattcgacggcaggcgtctc
tgcctcagcttccaccagaagacgccggtccccccggataccatcatcggcctcatccgg
ggcaacccgaagaagtaccagttttcaccggacttccggcttacggcggagcttgccgac
acctccttcgagggggtcctggaagaggccagaaatctcttgaaaaggcttggttga
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integrated database retrieval system
